Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 5.7e-187 657.5 351 100.0
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 1.5e-147 526.6 357 81.2
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.2e-146 522.7 376 79.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.8e-145 519.6 320 85.9
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.6e-144 516.5 359 79.7
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.6e-144 516.5 358 79.3
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-144 515.4 379 74.1
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.5e-144 515.4 379 74.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.7e-143 513.1 351 79.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.3e-143 512.7 379 73.9
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.5e-142 509.2 353 78.5
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 5.5e-142 508.1 366 78.4
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 4.7e-141 505.0 354 77.4
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-140 503.4 384 73.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 6.8e-140 501.1 354 78.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-140 501.1 351 78.1
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 6.8e-140 501.1 351 78.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-138 496.5 356 78.4
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.9e-136 488.0 345 77.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 8.6e-135 484.2 351 75.2
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.5e-134 482.6 387 71.6
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.6e-133 479.9 366 74.3
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.6e-133 478.8 429 65.5
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 2.6e-131 472.6 358 74.6
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 9.8e-131 470.7 354 74.9
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 3.2e-129 465.7 361 74.2
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.6e-127 457.6 365 72.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 8.6e-127 457.6 364 73.4
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.9e-126 456.4 380 71.1
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.5e-126 456.1 365 72.6
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 8.9e-124 447.6 366 71.0
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 2.6e-123 446.0 365 71.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.6e-123 446.0 365 71.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.2e-122 443.0 354 71.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-122 442.6 290 82.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.1e-121 438.7 385 66.2
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.7e-119 433.3 368 68.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 5.1e-119 431.8 345 70.4
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 4.3e-118 428.7 358 71.8
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.6e-117 425.6 358 71.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.7e-117 425.2 364 67.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.7e-117 425.2 357 69.5
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 8.1e-117 424.5 361 69.3
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.4e-116 423.7 391 62.9
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.8e-115 418.3 414 61.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.9e-115 417.5 382 63.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 4.9e-114 415.2 356 68.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 6.4e-114 414.8 358 68.2
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.4e-113 413.7 408 61.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.2e-113 412.5 378 62.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.2e-113 412.5 459 55.1
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 7.1e-113 411.4 369 67.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.2e-112 410.6 395 63.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.6e-112 410.2 362 65.7
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.5e-112 409.1 364 65.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.8e-112 407.9 392 61.7
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.3e-111 407.1 397 63.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.7e-111 406.8 341 69.8
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.9e-111 405.6 417 60.7
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 6.6e-111 404.8 367 64.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.3e-110 402.1 363 65.3
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.2e-109 400.6 418 59.8
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 6.8e-108 394.8 455 54.3
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 9.9e-107 391.0 364 66.5
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.7e-106 390.2 380 61.3
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 7.1e-105 384.8 487 50.9
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.2e-104 384.0 420 59.3
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.6e-104 383.6 487 50.7
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 3.0e-103 379.4 372 62.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 5.1e-103 378.6 383 59.0
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.5e-102 377.1 368 62.0
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.9e-102 376.7 325 67.1
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.5e-102 376.3 375 60.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.8e-101 372.9 352 63.9
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 6.2e-101 371.7 318 65.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.8e-100 370.2 423 57.0
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.2e-99 367.5 363 61.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.6e-99 366.3 374 59.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.8e-98 362.5 361 64.0
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.4e-97 360.5 451 53.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.6e-96 357.1 447 53.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.7e-95 353.6 378 60.6
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 3.0e-95 352.8 426 53.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.9e-95 352.4 451 51.7
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.3e-93 347.4 384 55.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.3e-93 347.4 484 48.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.1e-93 346.7 367 57.5
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 4.8e-93 345.5 453 50.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 4.8e-93 345.5 479 48.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 8.1e-93 344.7 466 49.4
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.1e-92 344.4 450 51.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 3.1e-92 342.8 482 48.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 4.0e-92 342.4 341 60.1
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 6.9e-92 341.7 339 63.7
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 6.9e-92 341.7 337 61.4
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.5e-91 340.5 375 57.6
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 5.8e-91 338.6 382 57.3
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.7e-90 337.0 364 57.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-90 336.7 456 48.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.8e-90 335.9 455 47.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.7e-88 329.7 450 48.7
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.7e-88 329.7 450 48.7
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.0e-88 328.6 373 56.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.0e-87 327.8 353 59.5
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-86 323.6 464 47.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.5e-86 323.2 366 57.9
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.7e-85 319.3 397 52.9
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 6.2e-85 318.5 476 46.0
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.1e-84 317.8 418 49.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.5e-80 302.8 324 56.8
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 5.1e-79 298.9 334 56.3
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.7e-79 298.1 336 57.4
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.3e-78 296.2 270 68.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 4.3e-78 295.8 282 64.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 9.3e-73 278.1 318 54.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.9e-70 270.4 354 50.8
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.2e-69 266.9 319 55.2
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.5e-66 255.4 310 54.2
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 7.2e-65 251.9 423 47.5
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.2e-64 251.1 428 42.3
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.3e-63 246.9 346 49.1
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 8.2e-61 238.4 387 43.7
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.9e-60 235.3 263 55.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.7e-56 223.4 379 46.4
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.0e-55 221.5 361 47.6
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-48 197.2 374 44.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.4e-46 188.7 131 76.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.7e-45 186.4 331 43.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 3.4e-38 163.3 361 41.6
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.0e-32 142.1 156 58.3
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.7e-26 124.4 76 85.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.6e-24 116.7 75 78.7
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.5e-22 111.3 244 39.3
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.4e-22 110.2 83 74.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.3e-21 108.2 67 79.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 2.2e-21 107.5 67 79.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-20 104.4 70 71.4
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.4e-20 104.0 339 33.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.0e-19 100.9 67 68.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-18 97.8 66 74.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.6e-18 95.5 310 30.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.6e-16 90.1 58 74.1
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 6.2e-16 89.4 192 42.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 3.1e-15 87.0 101 51.5
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 6.8e-15 85.9 101 53.5
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.8e-15 85.9 141 42.6
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.6e-10 69.3 54 72.2
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.6e-10 69.3 54 72.2
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.6e-10 69.3 54 72.2
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.6e-10 69.3 54 72.2
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 8.6e-10 68.9 54 72.2
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.5e-09 68.2 54 70.4
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.9e-09 67.8 54 70.4
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 4.3e-09 66.6 236 34.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-08 64.7 120 41.7
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-08 63.9 54 68.5
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.3e-07 60.8 36 80.6


User provided reference genes

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