Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p006686 Quercus lobata HOM05D000001 ORTHO05D009286 1.2e-70 269.6 127 100.0
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 1.2e-22 110.2 56 87.5
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 1.5e-20 103.2 55 81.8
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 4.3e-20 101.7 56 78.6
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 9.7e-20 100.5 55 78.2
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 3.7e-19 98.6 55 74.5
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 4.8e-19 98.2 82 54.9
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 6.3e-19 97.8 57 75.4
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 6.3e-19 97.8 57 73.7
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 6.3e-19 97.8 88 56.8
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 8.2e-19 97.4 56 69.6
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 1.1e-18 97.1 67 65.7
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 1.1e-18 97.1 57 75.4
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 1.1e-18 97.1 55 76.4
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 1.1e-18 97.1 57 77.2
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 1.4e-18 96.7 56 69.6
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 1.8e-18 96.3 82 57.3
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 1.8e-18 96.3 71 64.8
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 1.8e-18 96.3 80 58.8
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 1.8e-18 96.3 55 72.7
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 1.8e-18 96.3 55 74.5
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 3.1e-18 95.5 57 73.7
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 3.1e-18 95.5 57 73.7
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 3.1e-18 95.5 55 70.9
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 3.1e-18 95.5 55 70.9
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 3.1e-18 95.5 55 70.9
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 4.1e-18 95.1 71 63.4
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 4.1e-18 95.1 71 63.4
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 4.1e-18 95.1 56 76.8
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 5.3e-18 94.7 56 76.8
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 6.9e-18 94.4 84 50.0
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 6.9e-18 94.4 71 63.4
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 6.9e-18 94.4 84 53.6
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 6.9e-18 94.4 97 50.5
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 6.9e-18 94.4 57 71.9
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 9.0e-18 94.0 54 72.2
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 9.0e-18 94.0 83 56.6
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 1.2e-17 93.6 54 72.2
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 1.2e-17 93.6 57 71.9
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 2.0e-17 92.8 57 73.7
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 2.6e-17 92.4 57 66.7
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 2.6e-17 92.4 56 71.4
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 3.4e-17 92.0 56 73.2
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 3.4e-17 92.0 84 56.0
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 4.5e-17 91.7 57 71.9
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 7.6e-17 90.9 56 71.4
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 1.0e-16 90.5 83 55.4
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 1.0e-16 90.5 57 66.7
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 1.3e-16 90.1 63 63.5
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 1.3e-16 90.1 57 64.9
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 1.3e-16 90.1 57 64.9
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 1.7e-16 89.7 57 70.2
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.7e-16 89.7 57 71.9
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 2.9e-16 89.0 57 61.4
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 5.0e-16 88.2 57 71.9
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 5.0e-16 88.2 57 71.9
Eucgr.B01873 Eucalyptus grandis HOM05D000001 ORTHO05D009286 8.5e-16 87.4 55 70.9
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 8.5e-16 87.4 57 68.4
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.4e-15 86.7 46 76.1
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 1.4e-15 86.7 57 63.2
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 1.9e-15 86.3 57 63.2
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 2.5e-15 85.9 56 69.6
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 4.2e-15 85.1 57 64.9
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 4.2e-15 85.1 57 63.2
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 7.2e-15 84.3 56 67.9
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 7.2e-15 84.3 80 53.8
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 9.4e-15 84.0 56 67.9
ATR0030G028 Amborella trichopoda HOM05D000001 ORTHO05D009286 1.2e-14 83.6 57 64.9
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 1.6e-14 83.2 78 53.8
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 2.1e-14 82.8 55 67.3
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 4.6e-14 81.6 56 64.3
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 7.9e-14 80.9 57 59.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.0e-13 80.5 54 64.8
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 1.0e-13 80.5 55 65.5
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 1.4e-13 80.1 55 61.8
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 2.3e-13 79.3 56 64.3
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 3.0e-13 79.0 55 63.6
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 3.0e-13 79.0 55 61.8
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 3.9e-13 78.6 79 50.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.5e-12 76.6 85 49.4
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 1.9e-12 76.3 78 50.0
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 2.5e-12 75.9 55 60.0
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 2.5e-12 75.9 52 69.2
BcaC05g30155 Brassica carinata HOM05D000001 ORTHO05D009286 3.3e-12 75.5 82 50.0
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 5.7e-12 74.7 55 60.0
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 7.4e-12 74.3 54 61.1
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 7.4e-12 74.3 54 61.1
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 1.3e-11 73.6 53 62.3
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 6.3e-11 71.2 53 60.4
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 1.1e-10 70.5 44 63.6
SMO367G0812 Selaginella moellendorffii HOM05D000001 ORTHO05D009286 1.5e-09 66.6 53 58.5
SGA_v2.0_scaffold172G38993 Striga asiatica HOM05D000001 ORTHO05D009286 1.5e-09 66.6 64 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2674 Anthoceros agrestis HOM05D000001 ORTHO05D009286 2.0e-09 66.2 56 53.6
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 3.4e-09 65.5 45 57.8
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 1.6e-06 56.6 28 78.6
Lj9A80T24 Lonicera japonica HOM05D000001 ORTHO05D009286 2.7e-06 55.8 28 78.6


User provided reference genes

Program Settings