Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 2.9e-271 937.9 466 100.0
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 8.1e-149 531.2 484 61.6
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 3.8e-146 522.3 483 61.1
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 6.4e-146 521.5 476 61.1
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 2.7e-128 463.0 469 55.4
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 4.6e-128 462.2 476 55.7
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 1.0e-127 461.1 466 55.2
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 2.8e-125 453.0 469 54.2
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 2.4e-124 449.9 487 52.6
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 5.3e-124 448.7 469 53.7
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 3.8e-122 442.6 489 51.5
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.5e-121 439.9 446 54.9
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 7.2e-121 438.3 462 53.0
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.2e-120 437.6 446 54.9
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 3.6e-120 436.0 472 51.9
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.4e-119 434.1 469 52.9
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 5.1e-119 432.2 591 44.8
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 6.7e-119 431.8 465 52.3
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 6.7e-119 431.8 465 53.1
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 8.8e-119 431.4 467 53.5
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 9.7e-118 427.9 457 52.1
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.3e-117 427.6 472 51.9
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 1.3e-117 427.6 463 51.4
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 1.7e-117 427.2 467 52.0
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 6.3e-117 425.2 471 53.3
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 6.9e-116 421.8 394 57.9
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 9.1e-116 421.4 467 50.1
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 5.5e-113 412.1 460 48.7
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 1.0e-111 407.9 462 50.2
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 1.0e-111 407.9 467 51.0
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 2.3e-111 406.8 485 48.0
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.1e-110 404.4 464 50.4
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 5.7e-110 402.1 470 50.0
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 5.7e-110 402.1 471 50.3
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 4.8e-109 399.1 461 49.0
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 7.0e-108 395.2 416 52.6
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 4.5e-107 392.5 459 49.2
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 5.0e-106 389.0 472 48.5
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 6.5e-106 388.7 386 55.7
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 1.1e-105 387.9 456 49.8
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 1.5e-105 387.5 470 48.1
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.9e-105 387.1 467 49.5
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 9.4e-105 384.8 466 49.1
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 8.0e-104 381.7 461 47.3
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 5.2e-103 379.0 481 46.2
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 1.5e-102 377.5 463 46.9
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 2.6e-102 376.7 459 47.9
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 4.4e-102 375.9 464 47.4
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 7.5e-102 375.2 462 47.6
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.2e-101 373.6 471 46.5
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 1.8e-100 370.5 458 48.3
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 2.4e-100 370.2 519 44.1
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 3.1e-100 369.8 471 46.3
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 9.1e-100 368.2 472 47.5
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 2.0e-99 367.1 459 46.8
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 3.5e-99 366.3 456 48.5
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.3e-98 364.4 456 46.7
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.2e-98 363.6 455 47.3
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 3.8e-98 362.8 461 46.4
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 5.5e-97 359.0 471 43.7
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 7.2e-97 358.6 467 45.8
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 2.1e-96 357.1 460 47.2
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.1e-96 357.1 421 49.9
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 3.6e-96 356.3 466 45.3
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 1.8e-95 354.0 457 46.2
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 4.0e-95 352.8 451 46.6
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 4.0e-95 352.8 451 46.6
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 4.0e-95 352.8 462 44.8
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 2.0e-94 350.5 459 45.8
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 2.0e-94 350.5 465 44.5
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 3.7e-93 346.3 461 46.9
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 8.3e-93 345.1 416 48.6
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 9.1e-92 341.7 464 45.5
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 9.1e-92 341.7 464 45.5
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 2.7e-91 340.1 445 46.1
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 6.5e-90 335.5 459 44.2
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.5e-89 334.3 353 54.4
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 9.4e-89 331.6 341 55.1
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.5e-86 324.3 390 50.0
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.5e-86 322.0 469 41.6
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 6.3e-85 318.9 398 47.7
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 8.3e-85 318.5 488 42.8
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 4.1e-84 316.2 450 43.1
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 9.2e-84 315.1 463 45.4
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 3.5e-83 313.2 467 43.7
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 3.8e-82 309.7 422 43.8
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 3.5e-75 286.6 465 40.0
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.3e-74 284.6 457 40.9
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 1.1e-68 265.0 470 38.3
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 1.1e-68 265.0 460 40.0
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 2.7e-67 260.4 467 37.0
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 4.3e-65 253.1 468 38.2
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 2.0e-62 244.2 251 55.8
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 4.9e-53 213.0 238 52.5
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 1.4e-47 194.9 471 33.3
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.4e-44 184.9 474 29.7
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.6e-43 181.4 458 31.4
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 7.3e-41 172.6 192 52.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 6.9e-39 166.0 451 28.2
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 3.9e-34 150.2 168 51.2
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 5.8e-30 136.3 194 45.4
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.0e-26 125.6 387 28.7
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.3e-26 124.4 96 66.7
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.3e-24 118.6 148 45.3
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 1.2e-22 112.1 179 41.3
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 2.7e-19 100.9 151 39.7
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 3.9e-18 97.1 176 38.1
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 7.6e-14 82.8 202 27.7
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 9.7e-09 65.9 155 31.0
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 1.6e-08 65.1 155 30.3
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.6e-08 65.1 165 29.7
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 1.6e-08 65.1 165 29.7
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.6e-08 65.1 155 30.3
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 2.2e-08 64.7 155 30.3
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 2.8e-08 64.3 116 35.3
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 4.8e-08 63.5 155 29.7
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 6.3e-08 63.2 143 32.2
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 8.2e-08 62.8 155 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 1.1e-07 62.4 235 25.1
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 3.1e-07 60.8 150 30.7
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 3.1e-07 60.8 141 31.2
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 5.3e-07 60.1 150 30.7
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 1.5e-06 58.5 150 31.3
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 1.5e-06 58.5 150 31.3
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 1.5e-06 58.5 141 29.8
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 1.5e-06 58.5 141 30.5
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.0e-06 58.2 168 29.2
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.0e-06 58.2 142 34.5
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 2.6e-06 57.8 168 28.6
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 2.6e-06 57.8 164 28.7
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.6e-06 57.8 133 32.3
Haze_21959 Corylus avellana HOM05D002553 ORTHO05D002767 4.5e-06 57.0 179 33.5
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 4.5e-06 57.0 166 28.3
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 4.5e-06 57.0 166 28.3
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 5.9e-06 56.6 165 28.5
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 7.7e-06 56.2 150 29.3
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 7.7e-06 56.2 166 28.3


User provided reference genes

Program Settings