Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p003275 Quercus lobata HOM05D000475 ORTHO05D000343 6.5e-111 404.1 201 100.0
QL03p003024 Quercus lobata HOM05D000475 ORTHO05D000343 1.4e-86 323.2 249 71.9
Cfa006512 Carpinus fangiana HOM05D000475 ORTHO05D000343 2.0e-48 196.4 156 65.4
Haze_04274 Corylus avellana HOM05D000475 ORTHO05D000343 6.0e-48 194.9 152 66.4
CiPaw.07G012000 Carya illinoinensis HOM05D000475 ORTHO05D000343 5.0e-47 191.8 162 61.1
Dinv03767 Davidia involucrata HOM05D000475 ORTHO05D000343 2.0e-35 153.3 173 50.3
TWI12G0532 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 3.7e-34 149.1 174 50.0
Ciclev10000685m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.6e-32 143.7 177 50.3
Dinv12937 Davidia involucrata HOM05D000475 ORTHO05D000343 2.1e-32 143.3 186 47.3
Potri.013G029200 Populus trichocarpa HOM05D000475 ORTHO05D000343 6.6e-31 138.3 169 51.5
TWI36G1231 Tripterygium wilfordii HOM05D001469 ORTHO05D001648 1.1e-30 137.5 170 48.8
Sabra05G0040100 Salix brachista HOM05D000160 ORTHO05D000914 2.5e-30 136.3 169 49.7
Potri.005G043100 Populus trichocarpa HOM05D000475 ORTHO05D000343 9.5e-30 134.4 165 48.5
Potri.005G042700 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.2e-29 134.0 169 47.9
Dinv01782 Davidia involucrata HOM05D000475 ORTHO05D000343 3.6e-29 132.5 186 45.2
Ciclev10000711m.g Citrus clementina HOM05D000475 ORTHO05D000343 6.2e-29 131.7 160 49.4
Manes.08G125011 Manihot esculenta HOM05D001469 ORTHO05D001648 1.8e-28 130.2 164 47.6
CSS0016650 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 8.9e-28 127.9 187 40.6
Duzib128G1338 Durio zibethinus HOM05D001469 ORTHO05D001648 3.4e-27 125.9 162 45.1
Atru.chr2.595 Acer truncatum HOM05D000475 ORTHO05D000343 7.6e-27 124.8 177 45.2
Actinidia05742 Actinidia chinensis HOM05D000475 ORTHO05D000343 7.6e-27 124.8 178 42.1
Actinidia30903 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.3e-26 124.0 178 43.3
Lalb_Chr19g0126291 Lupinus albus HOM05D000475 ORTHO05D000343 2.2e-26 123.2 161 46.6
MD04G1213400 Malus domestica HOM05D000475 ORTHO05D000343 2.9e-26 122.9 185 42.7
MD12G1228500 Malus domestica HOM05D000475 ORTHO05D000343 2.7e-24 116.3 185 41.6
Glyma.06G309900 Glycine max HOM05D000475 ORTHO05D000343 4.6e-24 115.5 158 43.7
Sabra13G0029500 Salix brachista HOM05D000475 ORTHO05D000343 4.6e-24 115.5 238 37.4
Gohir.A13G166000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.3e-23 114.0 162 40.7
Glyma.04G122400 Glycine max HOM05D000475 ORTHO05D000343 3.9e-23 112.5 158 44.3
Gohir.D13G168900 Gossypium hirsutum HOM05D000475 ORTHO05D000343 5.1e-23 112.1 162 40.1
Gorai.013G193000 Gossypium raimondii HOM05D000475 ORTHO05D000343 5.1e-23 112.1 162 40.1
Prupe.6G333600 Prunus persica HOM05D000475 ORTHO05D000343 8.7e-23 111.3 171 45.0
Dinv12934 Davidia involucrata HOM05D000475 ORTHO05D000343 1.1e-22 110.9 200 40.0
FAN09G0557 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.1e-22 110.9 198 40.4
FAN09G1137 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.1e-22 110.9 198 40.4
Gohir.D13G103400 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.1e-22 110.9 161 42.9
GSVIVG01021983001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.1e-22 110.9 152 45.4
Gorai.013G116000 Gossypium raimondii HOM05D000475 ORTHO05D000343 7.3e-22 108.2 161 42.2
Ca_14233_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 1.2e-21 107.5 106 55.7
Ca_30546_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 1.2e-21 107.5 106 55.7
TPR.G18610 Trifolium pratense HOM05D000475 ORTHO05D000343 2.1e-21 106.7 156 44.9
TAR633G1584 Trochodendron aralioides HOM05D001469 ORTHO05D001648 2.1e-21 106.7 159 42.8
Medtr3g012490 Medicago truncatula HOM05D000475 ORTHO05D000343 3.6e-21 105.9 107 57.0
Psat5g223520 Pisum sativum HOM05D000475 ORTHO05D000343 3.6e-21 105.9 142 47.2
FvH4_6g04800 Fragaria vesca HOM05D000475 ORTHO05D000343 1.1e-20 104.4 198 37.9
FAN05G1933 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.1e-20 104.4 198 37.4
FAN05G3336 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.1e-20 104.4 198 37.4
Thecc.05G250600 Theobroma cacao HOM05D000475 ORTHO05D000343 1.1e-20 104.4 168 39.3
VMungo1080G0999 Vigna mungo HOM05D000475 ORTHO05D000343 3.1e-20 102.8 158 42.4
FAN14G3550 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.2e-19 100.9 198 37.4
Phvul.005G016600 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 1.5e-19 100.5 158 42.4
Lalb_Chr15g0079191 Lupinus albus HOM05D000475 ORTHO05D000343 2.6e-19 99.8 164 43.9
FAN02G3545 Fragaria x ananassa HOM05D000475 ORTHO05D000343 5.8e-19 98.6 198 37.4
RcHm_v2.0_Chr3g0453261 Rosa chinensis HOM05D000475 ORTHO05D000343 1.1e-17 94.4 221 33.9
CSS0036506 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 3.2e-17 92.8 149 44.3
Psat5g223480 Pisum sativum HOM05D000475 ORTHO05D000343 3.2e-17 92.8 163 41.1
COL.COLO4_36075 Corchorus olitorius HOM05D000475 ORTHO05D000343 5.4e-17 92.0 157 36.9
MELO3C004333.2 Cucumis melo HOM05D000475 ORTHO05D000343 1.2e-16 90.9 156 39.7
TPR.G18618 Trifolium pratense HOM05D000475 ORTHO05D000343 3.5e-16 89.4 155 39.4
Phvul.006G019411 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 6.0e-16 88.6 158 39.9
Rhsim07G0177300 Rhododendron simsii HOM05D000475 ORTHO05D000343 6.0e-16 88.6 166 40.4
Dinv11296 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-15 87.4 158 34.8
Dinv11294 Davidia involucrata HOM05D000475 ORTHO05D000343 1.7e-15 87.0 158 34.8
ClCG02G016200 Citrullus lanatus HOM05D000475 ORTHO05D000343 3.0e-15 86.3 156 37.8
CsaV3_2G004580 Cucumis sativus L. HOM05D000475 ORTHO05D000343 5.1e-15 85.5 156 39.1
CsaV3_2G004710 Cucumis sativus L. HOM05D000475 ORTHO05D000343 5.1e-15 85.5 156 39.1
Medtr3g012500 Medicago truncatula HOM05D000475 ORTHO05D000343 1.1e-14 84.3 155 39.4
vmacro19752 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 1.5e-14 84.0 166 34.9
vmacro19789 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 1.9e-14 83.6 166 34.9
Rhsim05G0147900 Rhododendron simsii HOM05D000475 ORTHO05D000343 5.6e-14 82.0 216 31.9
Eucgr.H04429 Eucalyptus grandis HOM05D000475 ORTHO05D000343 4.8e-13 79.0 165 34.5
Sed0015527 Sechium edule HOM05D000475 ORTHO05D000343 3.4e-11 72.8 158 36.1
arahy.Tifrunner.gnm1.ann1.YUJY33 Arachis hypogaea HOM05D000475 ORTHO05D000343 4.5e-11 72.4 188 36.2
Nn3g21256 Nelumbo nucifera HOM05D000475 ORTHO05D000343 9.9e-11 71.2 157 35.7
Lj3g0023474 Lotus japonicus HOM05D000475 ORTHO05D000343 1.7e-10 70.5 107 44.9
CANSAT54G2330 Cannabis sativa HOM05D000475 ORTHO05D000343 3.8e-10 69.3 188 31.4
Glyma.04G122200 Glycine max HOM05D000475 ORTHO05D000343 6.4e-10 68.6 152 35.5
Aqoxy5G00636 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 8.4e-10 68.2 164 31.1
arahy.Tifrunner.gnm1.ann1.RFJL13 Arachis hypogaea HOM05D000475 ORTHO05D000343 2.4e-09 66.6 86 52.3
Gohir.A13G100000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.2e-09 66.2 157 29.3
COL.COLO4_36077 Corchorus olitorius HOM05D000001 ORTHO05D000343 1.2e-08 64.3 108 39.8
HanXRQChr04g0117821 Helianthus annuus HOM05D000475 ORTHO05D000343 1.6e-08 63.9 142 33.8
Lj1C39T7 Lonicera japonica HOM05D000475 ORTHO05D000343 2.1e-08 63.5 183 29.0
Glyma.06G309600 Glycine max HOM05D000475 ORTHO05D000343 4.6e-08 62.4 97 43.3
Nitab4.5_0002708g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 6.0e-08 62.0 171 31.0
Sed0027027 Sechium edule HOM05D000475 ORTHO05D000343 6.0e-08 62.0 159 31.4
Lj3g0015507 Lotus japonicus HOM05D000475 ORTHO05D000343 5.1e-07 58.9 141 36.2
Nn4g26064 Nelumbo nucifera HOM05D000475 ORTHO05D000343 4.3e-06 55.8 146 35.6
EL10Ac7g17365 Beta vulgaris HOM05D000475 ORTHO05D000343 5.6e-06 55.5 150 30.7
VMungo1215G0339 Vigna mungo HOM05D000475 ORTHO05D000343 5.6e-06 55.5 99 43.4
Nitab4.5_0001651g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 9.6e-06 54.7 171 31.0


User provided reference genes

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