Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p003024 Quercus lobata HOM05D000475 ORTHO05D000343 2.2e-174 615.5 317 100.0
QL03p003275 Quercus lobata HOM05D000475 ORTHO05D000343 1.9e-85 320.1 249 71.9
Cfa006512 Carpinus fangiana HOM05D000475 ORTHO05D000343 5.3e-75 285.4 224 65.6
Haze_04274 Corylus avellana HOM05D000475 ORTHO05D000343 2.0e-74 283.5 220 65.9
CiPaw.07G012000 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.9e-69 266.9 229 59.8
Dinv03767 Davidia involucrata HOM05D000475 ORTHO05D000343 8.2e-52 208.4 248 48.0
Sabra05G0040100 Salix brachista HOM05D000160 ORTHO05D000914 1.0e-49 201.4 240 50.0
Potri.013G029200 Populus trichocarpa HOM05D000475 ORTHO05D000343 6.1e-47 192.2 240 48.3
Manes.08G125011 Manihot esculenta HOM05D001469 ORTHO05D001648 2.3e-46 190.3 227 48.5
Dinv12937 Davidia involucrata HOM05D000475 ORTHO05D000343 3.9e-46 189.5 278 43.5
Ciclev10000685m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.1e-45 188.0 231 49.4
Potri.005G043100 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.1e-45 188.0 240 46.7
Potri.005G042700 Populus trichocarpa HOM05D000475 ORTHO05D000343 2.6e-45 186.8 240 46.7
TWI36G1231 Tripterygium wilfordii HOM05D001469 ORTHO05D001648 3.3e-45 186.4 235 46.8
Duzib128G1338 Durio zibethinus HOM05D001469 ORTHO05D001648 1.1e-43 181.4 229 45.9
Prupe.6G333600 Prunus persica HOM05D000475 ORTHO05D000343 7.0e-43 178.7 299 40.5
Dinv01782 Davidia involucrata HOM05D000475 ORTHO05D000343 1.2e-42 177.9 261 42.9
MD04G1213400 Malus domestica HOM05D000475 ORTHO05D000343 4.5e-42 176.0 253 43.5
Lalb_Chr19g0126291 Lupinus albus HOM05D000475 ORTHO05D000343 8.5e-41 171.8 224 46.9
FAN09G0557 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.9e-40 170.6 268 42.5
FAN09G1137 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.9e-40 170.6 268 42.5
FAN05G1933 Fragaria x ananassa HOM05D000475 ORTHO05D000343 3.2e-40 169.9 268 41.0
FAN05G3336 Fragaria x ananassa HOM05D000475 ORTHO05D000343 3.2e-40 169.9 268 41.0
FvH4_6g04800 Fragaria vesca HOM05D000475 ORTHO05D000343 4.2e-40 169.5 268 41.4
Atru.chr2.595 Acer truncatum HOM05D000475 ORTHO05D000343 2.7e-39 166.8 234 46.6
Glyma.04G122400 Glycine max HOM05D000475 ORTHO05D000343 2.7e-39 166.8 226 45.1
CSS0016650 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 4.7e-39 166.0 254 39.4
FAN14G3550 Fragaria x ananassa HOM05D000475 ORTHO05D000343 4.7e-39 166.0 268 41.0
FAN02G3545 Fragaria x ananassa HOM05D000475 ORTHO05D000343 8.0e-39 165.2 268 41.4
Glyma.06G309900 Glycine max HOM05D000475 ORTHO05D000343 1.0e-38 164.9 226 43.4
Gohir.D13G168900 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.0e-38 164.9 229 42.4
Sabra13G0029500 Salix brachista HOM05D000475 ORTHO05D000343 1.8e-38 164.1 271 39.5
Gohir.A13G166000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.3e-38 163.7 229 41.9
MD12G1228500 Malus domestica HOM05D000475 ORTHO05D000343 4.0e-38 162.9 253 41.5
Gorai.013G193000 Gossypium raimondii HOM05D000475 ORTHO05D000343 8.8e-38 161.8 229 41.5
Thecc.05G250600 Theobroma cacao HOM05D000475 ORTHO05D000343 1.5e-37 161.0 231 41.6
TWI12G0532 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 1.5e-37 161.0 189 49.2
COL.COLO4_36075 Corchorus olitorius HOM05D000475 ORTHO05D000343 1.3e-36 157.9 226 41.6
Gohir.D13G103400 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.7e-36 156.4 228 41.7
RcHm_v2.0_Chr3g0453261 Rosa chinensis HOM05D000475 ORTHO05D000343 4.8e-36 156.0 190 47.9
Gorai.013G116000 Gossypium raimondii HOM05D000475 ORTHO05D000343 8.2e-36 155.2 228 41.7
Phvul.005G016600 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 1.8e-35 154.1 209 45.0
Ciclev10000711m.g Citrus clementina HOM05D000475 ORTHO05D000343 3.5e-34 149.8 229 43.2
VMungo1080G0999 Vigna mungo HOM05D000475 ORTHO05D000343 8.5e-33 145.2 211 43.1
Actinidia30903 Actinidia chinensis HOM05D000475 ORTHO05D000343 2.5e-32 143.7 242 39.7
Actinidia05742 Actinidia chinensis HOM05D000475 ORTHO05D000343 4.2e-32 142.9 242 38.4
Dinv12934 Davidia involucrata HOM05D000475 ORTHO05D000343 5.5e-32 142.5 296 36.1
Phvul.006G019411 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 2.7e-31 140.2 209 43.1
Eucgr.H04429 Eucalyptus grandis HOM05D000475 ORTHO05D000343 2.6e-29 133.7 223 38.6
Psat5g223520 Pisum sativum HOM05D000475 ORTHO05D000343 5.4e-27 125.9 252 39.3
TAR633G1584 Trochodendron aralioides HOM05D001469 ORTHO05D001648 7.0e-27 125.6 222 39.2
MELO3C004333.2 Cucumis melo HOM05D000475 ORTHO05D000343 1.6e-26 124.4 212 38.7
Rhsim05G0147900 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.6e-26 124.4 274 33.2
Dinv11296 Davidia involucrata HOM05D000475 ORTHO05D000343 4.5e-26 122.9 231 35.5
Dinv11294 Davidia involucrata HOM05D000475 ORTHO05D000343 7.7e-26 122.1 231 35.5
CsaV3_2G004580 Cucumis sativus L. HOM05D000475 ORTHO05D000343 1.0e-25 121.7 212 38.7
CsaV3_2G004710 Cucumis sativus L. HOM05D000475 ORTHO05D000343 1.0e-25 121.7 212 38.7
TPR.G18610 Trifolium pratense HOM05D000475 ORTHO05D000343 1.0e-25 121.7 268 36.6
ClCG02G016200 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.7e-25 120.9 209 37.8
CANSAT54G2330 Cannabis sativa HOM05D000475 ORTHO05D000343 2.3e-25 120.6 261 35.2
vmacro19789 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 2.3e-25 120.6 250 34.4
Ca_14233_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 3.8e-25 119.8 266 35.0
Ca_30546_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 3.8e-25 119.8 266 35.0
vmacro19752 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 5.0e-25 119.4 250 34.0
CSS0036506 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 8.6e-25 118.6 340 32.9
Rhsim07G0177300 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.5e-24 117.9 231 39.0
Lalb_Chr15g0079191 Lupinus albus HOM05D000475 ORTHO05D000343 1.9e-24 117.5 230 38.3
TPR.G18618 Trifolium pratense HOM05D000475 ORTHO05D000343 4.2e-24 116.3 211 38.4
Psat5g223480 Pisum sativum HOM05D000475 ORTHO05D000343 9.5e-24 115.2 238 38.2
Gohir.A13G100000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.8e-23 113.6 224 32.6
GSVIVG01021983001 Vitis vinifera HOM05D000475 ORTHO05D000343 2.8e-23 113.6 308 31.2
Medtr3g012490 Medicago truncatula HOM05D000475 ORTHO05D000343 1.0e-22 111.7 229 37.6
Medtr3g012500 Medicago truncatula HOM05D000475 ORTHO05D000343 5.2e-22 109.4 235 35.7
Nn3g21256 Nelumbo nucifera HOM05D000475 ORTHO05D000343 1.5e-21 107.8 233 35.6
PGR031G0207 Punica granatum HOM05D000475 ORTHO05D000343 6.3e-20 102.4 222 35.6
Sed0015527 Sechium edule HOM05D000475 ORTHO05D000343 6.3e-20 102.4 212 35.8
arahy.Tifrunner.gnm1.ann1.RFJL13 Arachis hypogaea HOM05D000475 ORTHO05D000343 3.1e-19 100.1 229 34.1
arahy.Tifrunner.gnm1.ann1.YUJY33 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.2e-18 98.2 229 34.5
Lj3g0015507 Lotus japonicus HOM05D000475 ORTHO05D000343 1.6e-18 97.8 299 31.4
Lj3g0023474 Lotus japonicus HOM05D000475 ORTHO05D000343 4.5e-18 96.3 215 37.2
Nitab4.5_0002708g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.1e-16 91.7 246 33.3
Nitab4.5_0001651g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.6e-15 87.8 243 33.7
CAN.G426.15 Capsicum annuum HOM05D000475 ORTHO05D000343 8.0e-15 85.5 173 34.7
Glyma.04G122200 Glycine max HOM05D000475 ORTHO05D000343 1.0e-14 85.1 205 34.6
ClCG09G008340 Citrullus lanatus HOM05D001772 ORTHO05D002266 1.4e-14 84.7 196 32.1
VMungo1215G0339 Vigna mungo HOM05D000475 ORTHO05D000343 1.2e-13 81.6 235 32.3
Glyma.06G309600 Glycine max HOM05D000475 ORTHO05D000343 1.5e-13 81.3 208 33.2
Peaxi162Scf00017g00317 Petunia axillaris HOM05D000475 ORTHO05D000343 2.0e-13 80.9 245 33.1
Sed0027027 Sechium edule HOM05D000475 ORTHO05D000343 2.6e-13 80.5 237 29.5
PGSC0003DMG400016842 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.3e-12 78.2 174 33.3
Lj5A680G19 Lonicera japonica HOM05D000475 ORTHO05D000343 2.2e-12 77.4 331 28.4
Sopen09g029220 Solanum pennellii HOM05D000475 ORTHO05D000343 4.9e-12 76.3 176 33.0
PSO675G2662 Papaver somniferum HOM05D000475 ORTHO05D000343 2.4e-11 73.9 137 33.6
SHI18252 Sapria himalayana HOM05D000475 ORTHO05D000343 2.4e-11 73.9 218 32.6
Phvul.003G041800 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 3.2e-11 73.6 230 31.7
THA.LOC104808240 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 7.0e-11 72.4 217 35.9
SpUn0002_0100 Schrenkiella parvula HOM05D000475 ORTHO05D000343 9.2e-11 72.0 225 32.0
Solyc09g074380.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 9.2e-11 72.0 176 31.8
DCAR_002785 Daucus carota HOM05D000475 ORTHO05D000343 7.8e-10 68.9 208 31.7
Thhalv10023283m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 7.8e-10 68.9 233 30.0
HanXRQChr04g0117821 Helianthus annuus HOM05D000475 ORTHO05D000343 7.8e-10 68.9 234 28.6
EL10Ac7g17365 Beta vulgaris HOM05D000475 ORTHO05D000343 1.0e-09 68.6 340 26.2
Nn4g26064 Nelumbo nucifera HOM05D000475 ORTHO05D000343 1.0e-09 68.6 209 32.5
Aqoxy5G00636 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.3e-09 68.2 159 32.7
QL03p003268 Quercus lobata HOM05D000475 ORTHO05D338011 1.3e-09 68.2 61 68.9
Cc01_g20170 Coffea canephora HOM05D000475 ORTHO05D000343 3.0e-09 67.0 260 28.8
COL.COLO4_36077 Corchorus olitorius HOM05D000001 ORTHO05D000343 3.9e-09 66.6 153 33.3
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 5.0e-09 66.2 201 29.9
Peaxi162Scf00936g00210 Petunia axillaris HOM05D000475 ORTHO05D000343 8.6e-09 65.5 254 29.5
AT2G32910 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 3.3e-08 63.5 214 30.4
Oeu057553.1 Olea europaea HOM05D000475 ORTHO05D000343 3.3e-08 63.5 247 28.3
AL4G28430 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 4.3e-08 63.2 215 28.4
Carub.0004s1434 Capsella rubella HOM05D000475 ORTHO05D000343 5.6e-08 62.8 231 29.9
Lj1C39T7 Lonicera japonica HOM05D000475 ORTHO05D000343 7.3e-08 62.4 183 29.0
Prupe.2G195500 Prunus persica HOM05D000475 ORTHO05D000343 1.4e-06 58.2 64 45.3


User provided reference genes

Program Settings