Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 3.4e-238 828.6 635 100.0
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 4.0e-207 725.3 635 89.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 2.6e-134 483.4 635 54.5
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.2e-131 474.6 599 53.4
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.7e-128 464.2 635 52.6
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 1.6e-94 351.3 635 53.5
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 4.7e-91 339.7 256 70.7
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 3.9e-85 320.1 652 46.3
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 4.2e-79 300.1 640 42.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.6e-75 288.1 599 45.2
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.4e-73 280.4 618 36.7
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.4e-73 280.4 600 42.2
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 2.7e-70 270.8 636 50.8
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 3.5e-70 270.4 634 46.5
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 3.6e-67 260.4 636 44.5
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 1.4e-66 258.5 597 34.2
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 2.0e-65 254.6 635 39.2
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.6e-65 254.2 600 34.7
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 5.8e-65 253.1 625 34.9
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.3e-64 251.9 618 35.3
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 3.8e-64 250.4 640 49.7
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-63 248.8 654 37.3
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 5.4e-63 246.5 647 40.2
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 2.5e-60 237.7 756 34.8
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 7.4e-60 236.1 604 46.2
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.1e-58 232.3 654 46.5
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 2.6e-57 227.6 635 31.2
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 4.5e-57 226.9 637 34.1
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 4.5e-57 226.9 660 30.0
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 7.6e-57 226.1 687 37.6
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 4.9e-56 223.4 635 38.7
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.2e-54 218.8 668 38.9
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 7.9e-54 216.1 749 37.0
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.0e-53 215.7 668 38.8
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.0e-53 215.7 673 37.3
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.3e-53 215.3 605 42.3
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 1.9e-52 211.5 656 37.2
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 2.5e-52 211.1 636 32.1
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.3e-51 208.8 642 35.5
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.6e-51 208.4 637 37.5
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.7e-51 207.2 640 41.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.2e-51 206.1 627 48.3
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.1e-50 205.7 639 42.7
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.1e-50 205.7 656 30.2
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 4.0e-50 203.8 635 31.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 5.3e-50 203.4 639 29.0
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.3e-50 203.4 627 45.9
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 6.9e-50 203.0 639 48.0
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 9.0e-50 202.6 637 34.5
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 8.4e-48 196.1 624 34.6
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.4e-47 195.3 599 36.6
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.9e-47 194.9 639 43.3
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.5e-47 194.5 904 28.4
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.2e-46 192.2 639 36.3
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.1e-46 191.4 638 39.5
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.7e-46 191.0 600 28.3
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 3.5e-46 190.7 635 37.5
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 4.6e-46 190.3 634 27.6
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 7.9e-46 189.5 646 42.0
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.7e-45 186.4 640 43.1
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 6.7e-45 186.4 645 31.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 3.3e-44 184.1 636 37.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 5.7e-44 183.3 647 32.9
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.8e-43 181.0 757 31.4
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.7e-43 180.6 640 43.9
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.8e-43 180.3 643 42.9
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 9.0e-42 176.0 651 30.4
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.5e-41 175.3 250 44.0
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 5.9e-41 173.3 642 46.4
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.0e-40 172.6 205 47.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.3e-40 172.2 255 42.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.1e-39 169.1 660 29.7
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 7.2e-39 166.4 636 31.4
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.6e-38 165.2 606 34.8
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.6e-38 164.1 638 35.9
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 6.1e-38 163.3 705 29.1
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 6.1e-38 163.3 218 48.6
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 6.1e-38 163.3 639 30.8
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 3.0e-37 161.0 600 41.2
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 6.7e-37 159.8 641 32.8
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 8.8e-37 159.5 101 88.1
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 4.3e-36 157.1 640 37.0
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.3e-35 155.6 227 40.5
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 3.1e-34 151.0 612 30.6
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 9.1e-34 149.4 645 30.4
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.0e-33 148.3 757 35.1
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 7.7e-33 146.4 646 31.9
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 1.7e-32 145.2 639 27.1
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 1.7e-32 145.2 639 27.1
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.7e-32 145.2 646 25.5
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.0e-32 143.7 619 26.2
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.1e-30 138.3 642 32.7
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 2.1e-30 138.3 640 34.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.1e-30 138.3 238 37.0
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 3.6e-30 137.5 639 26.0
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 6.1e-30 136.7 694 28.8
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 7.9e-30 136.3 643 37.8
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 7.4e-28 129.8 302 34.1
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.8e-27 127.9 616 25.6
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 8.2e-27 126.3 315 32.4
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.1e-26 124.4 647 43.6
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 4.1e-26 124.0 249 34.1
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 2.6e-25 121.3 160 46.9
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.0e-24 119.4 256 34.0
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.7e-24 118.6 639 33.5
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 3.2e-23 114.4 190 40.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 9.4e-23 112.8 169 41.4
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.1e-22 111.7 634 32.3
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 3.6e-22 110.9 616 32.8
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 8.0e-22 109.8 130 48.5
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.8e-21 108.6 137 47.4
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 3.0e-21 107.8 216 37.5
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 3.0e-21 107.8 259 34.4
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 3.9e-21 107.5 268 32.1
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 5.2e-21 107.1 256 30.5
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 5.2e-21 107.1 256 30.5
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.1e-20 105.9 137 44.5
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 7.4e-20 103.2 136 44.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.2e-19 101.7 287 29.3
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 6.3e-19 100.1 671 27.6
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 7.7e-17 93.2 645 30.9
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 2.1e-14 85.1 637 21.8
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.6e-14 84.3 222 28.8
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 8.0e-14 83.2 256 27.7
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.6e-12 78.2 262 27.5
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 2.4e-10 71.6 651 20.9
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 5.3e-10 70.5 160 36.9
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 9.1e-10 69.7 120 37.5
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 9.1e-10 69.7 80 48.8
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.0e-09 68.6 128 38.3
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.5e-09 67.4 611 38.0
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 4.5e-09 67.4 150 34.0
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 5.0e-08 63.9 151 31.8
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 8.5e-08 63.2 625 23.5
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 3.2e-07 61.2 200 29.5
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 3.2e-07 61.2 200 29.5
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 9.4e-07 59.7 608 33.2
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 1.6e-06 58.9 288 30.2
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.6e-06 57.8 331 21.5
Lj5g0022619 Lotus japonicus HOM05D000160 ORTHO05D000914 6.1e-06 57.0 99 36.4
Haze_23464 Corylus avellana HOM05D004923 ORTHO05D005940 8.0e-06 56.6 90 48.9


User provided reference genes

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