Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.2e-97 359.8 174 100.0
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.6e-89 332.8 176 92.6
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 3.3e-87 325.1 174 90.8
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.4e-85 318.9 167 94.0
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 9.0e-85 317.0 175 88.6
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.2e-84 316.6 174 89.1
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.5e-84 316.2 175 86.9
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.0e-84 315.8 174 89.1
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.8e-84 314.3 175 87.4
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.7e-83 312.8 174 87.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.7e-83 312.8 175 86.3
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.7e-83 312.8 176 86.9
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.9e-83 311.2 174 85.6
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 4.9e-83 311.2 174 86.8
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 4.9e-83 311.2 176 86.4
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.9e-83 311.2 174 86.8
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 6.4e-83 310.8 176 85.8
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 8.4e-83 310.5 175 87.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 4.2e-82 308.1 179 86.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 7.1e-82 307.4 176 84.1
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 7.1e-82 307.4 175 86.3
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.3e-82 307.0 174 85.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.3e-82 307.0 174 85.1
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 9.3e-82 307.0 176 85.8
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 9.3e-82 307.0 175 85.1
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 9.3e-82 307.0 175 85.1
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 9.3e-82 307.0 175 85.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.6e-81 306.2 174 85.1
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.1e-81 305.8 175 84.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.1e-81 305.8 174 86.8
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.7e-81 305.4 166 88.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 3.5e-81 305.1 174 85.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.6e-81 304.7 174 85.6
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 4.6e-81 304.7 175 85.7
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.6e-81 304.7 174 85.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 6.0e-81 304.3 176 84.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 6.0e-81 304.3 175 82.9
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.9e-81 303.9 175 85.1
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.0e-80 303.5 175 84.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.0e-80 303.5 175 84.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.3e-80 303.1 177 83.6
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.8e-80 302.8 160 93.1
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 3.0e-80 302.0 176 84.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.9e-80 301.6 176 84.1
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.9e-80 301.6 174 83.9
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 5.1e-80 301.2 173 85.0
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 6.7e-80 300.8 173 83.8
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 8.7e-80 300.4 175 84.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 8.7e-80 300.4 175 84.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.5e-79 299.7 175 82.3
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-79 299.3 175 82.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.9e-79 299.3 174 83.3
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.5e-79 298.9 175 81.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.3e-79 298.5 175 81.7
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 3.3e-79 298.5 177 81.9
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.3e-79 298.1 175 82.3
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 5.6e-79 297.7 175 81.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.6e-78 296.2 170 84.7
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.8e-78 294.7 166 83.7
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.8e-78 294.7 174 82.8
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 4.8e-78 294.7 177 79.7
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 6.2e-78 294.3 174 79.9
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 6.2e-78 294.3 174 79.9
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.1e-77 293.5 174 78.7
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.4e-77 293.1 174 81.6
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.8e-77 292.7 175 81.1
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.4e-77 292.4 177 79.1
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.4e-77 292.4 175 81.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 3.1e-77 292.0 176 79.5
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 4.0e-77 291.6 174 79.3
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.0e-76 289.3 173 81.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.6e-76 288.9 167 83.2
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 2.6e-76 288.9 226 67.3
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.6e-76 288.9 175 80.6
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.4e-76 288.5 174 78.7
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 5.8e-76 287.7 166 84.3
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 5.8e-76 287.7 175 78.3
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 5.8e-76 287.7 167 83.8
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.6e-76 287.3 168 82.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 176 77.3
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-75 286.6 173 80.3
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.3e-75 286.6 164 86.0
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.3e-75 286.6 166 84.9
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.7e-75 286.2 174 81.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-75 285.8 170 80.6
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.2e-75 285.8 171 79.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.2e-75 285.8 173 80.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 4.9e-75 284.6 168 81.0
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 6.5e-75 284.3 181 79.6
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 8.4e-75 283.9 175 79.4
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.4e-75 283.9 167 81.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 8.4e-75 283.9 174 77.0
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-74 283.5 168 78.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.1e-74 283.5 176 78.4
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.4e-74 283.1 174 79.3
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.9e-74 282.7 166 82.5
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-74 282.7 167 80.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.2e-74 282.0 174 78.7
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 4.2e-74 281.6 175 81.1
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.2e-73 280.0 167 81.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.6e-73 279.6 156 87.8
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.6e-73 279.6 166 81.9
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 2.7e-73 278.9 170 79.4
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.5e-73 278.5 175 78.9
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 3.5e-73 278.5 175 77.1
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 4.6e-73 278.1 168 78.6
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 4.6e-73 278.1 168 78.6
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 4.6e-73 278.1 168 78.6
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 4.6e-73 278.1 168 78.6
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 4.6e-73 278.1 172 77.9
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.0e-72 276.9 168 78.0
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 5.1e-72 274.6 168 79.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 5.1e-72 274.6 175 74.3
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.1e-71 273.5 176 74.4
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.1e-71 273.5 157 81.5
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.5e-71 272.3 170 77.1
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 4.3e-71 271.6 176 74.4
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 9.7e-71 270.4 162 79.0
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.3e-70 270.0 154 85.1
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.2e-70 269.2 162 78.4
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.2e-70 269.2 177 73.4
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 4.8e-70 268.1 170 75.9
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 2.4e-69 265.8 170 74.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 9.0e-69 263.8 158 81.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.2e-68 263.5 164 79.9
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 7.6e-68 260.8 166 75.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 2.2e-67 259.2 169 76.3
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 5.0e-67 258.1 175 69.1
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 5.0e-67 258.1 174 71.8
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 2.7e-65 252.3 174 70.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.0e-64 250.4 171 69.6
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.5e-63 246.5 171 67.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.4e-63 244.2 166 70.5
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 8.5e-59 230.7 166 66.9
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.1e-58 230.3 166 66.9
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-53 213.4 122 84.4
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-53 213.4 122 84.4
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.4e-53 213.4 137 76.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.8e-53 213.0 123 84.6
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.6e-52 209.1 121 80.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 3.4e-52 208.8 121 83.5
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.1e-49 199.5 115 84.3
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.3e-48 196.1 190 51.6
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 3.0e-48 195.7 113 84.1
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.4e-40 170.2 173 49.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 6.7e-40 167.9 95 88.4
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.7e-39 164.9 97 77.3
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-38 163.7 104 74.0
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.2e-38 162.9 101 76.2
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 7.0e-37 157.9 86 83.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 6.5e-27 124.8 109 59.6
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-24 116.7 60 85.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.0e-24 115.9 185 36.8
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-21 107.5 118 52.5
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.4e-21 106.3 117 47.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.7e-20 102.8 63 84.1
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.6e-19 98.2 140 38.6
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 8.6e-19 97.8 162 36.4
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.5e-18 97.1 54 85.2
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-17 91.3 96 46.9
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.4e-16 90.5 52 84.6
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.3e-14 84.0 48 83.3
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.1e-13 80.9 50 80.0
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 7.5e-07 58.2 36 80.6


User provided reference genes

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