Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 4.5e-300 1033.9 545 100.0
QL07p043079 Quercus lobata HOM05D007148 ORTHO05D009047 8.0e-148 528.1 338 85.2
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 4.3e-101 372.9 858 35.8
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 1.0e-62 245.4 192 71.4
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 4.8e-52 209.9 172 66.3
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 1.4e-51 208.4 180 64.4
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 3.1e-51 207.2 175 65.1
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 4.1e-51 206.8 167 69.5
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 4.1e-51 206.8 177 63.8
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.2e-50 205.3 170 67.6
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 1.2e-50 205.3 173 65.9
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 1.6e-50 204.9 172 64.5
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 2.7e-50 204.1 179 63.7
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 3.5e-50 203.8 148 71.6
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 1.0e-49 202.2 180 61.1
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 1.0e-49 202.2 175 64.0
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 3.8e-49 200.3 172 65.7
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 8.6e-49 199.1 182 62.6
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 1.1e-48 198.7 171 63.7
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 1.1e-48 198.7 168 66.1
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 1.5e-48 198.4 205 56.1
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 1.9e-48 198.0 171 64.3
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 1.9e-48 198.0 172 63.4
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.9e-48 198.0 175 63.4
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 3.3e-48 197.2 173 64.2
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 4.2e-48 196.8 181 61.9
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 4.2e-48 196.8 170 62.9
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 7.2e-48 196.1 157 68.2
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 7.2e-48 196.1 157 68.2
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 9.5e-48 195.7 223 53.8
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 1.2e-47 195.3 168 64.3
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 1.2e-47 195.3 162 64.2
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 1.6e-47 194.9 175 62.9
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 1.6e-47 194.9 173 61.3
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 3.6e-47 193.7 161 65.2
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 4.7e-47 193.4 143 70.6
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 6.1e-47 193.0 172 65.1
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 8.0e-47 192.6 171 62.0
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 1.0e-46 192.2 155 66.5
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 2.3e-46 191.0 213 55.4
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 2.3e-46 191.0 167 62.3
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 2.3e-46 191.0 145 68.3
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 3.0e-46 190.7 153 67.3
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 3.0e-46 190.7 172 61.0
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 5.2e-46 189.9 160 65.6
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 5.2e-46 189.9 197 57.4
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 1.5e-45 188.3 173 62.4
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 1.5e-45 188.3 171 61.4
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 7.5e-45 186.0 170 60.0
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 9.8e-45 185.7 170 60.6
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 1.3e-44 185.3 208 53.8
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 1.7e-44 184.9 154 63.0
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 2.2e-44 184.5 167 60.5
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 4.9e-44 183.3 150 66.0
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 8.3e-44 182.6 171 59.6
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 8.3e-44 182.6 164 61.6
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 1.1e-43 182.2 165 61.2
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 2.4e-43 181.0 145 65.5
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 2.4e-43 181.0 177 59.9
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 1.2e-42 178.7 154 61.7
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 1.2e-42 178.7 173 57.8
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 1.2e-42 178.7 158 62.0
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 2.7e-42 177.6 174 56.9
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 2.7e-42 177.6 173 57.8
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 2.7e-42 177.6 179 55.9
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.7e-42 177.6 158 60.8
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 3.5e-42 177.2 171 59.1
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 4.5e-42 176.8 154 63.6
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 5.9e-42 176.4 155 62.6
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 7.8e-42 176.0 153 60.8
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 7.8e-42 176.0 147 63.9
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 1.0e-41 175.6 143 62.9
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 1.7e-41 174.9 143 63.6
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.7e-41 174.9 176 55.7
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 2.3e-41 174.5 178 57.3
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 2.9e-41 174.1 147 63.9
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 2.9e-41 174.1 158 60.1
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 2.9e-41 174.1 142 64.8
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 3.9e-41 173.7 157 61.1
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 5.0e-41 173.3 174 55.2
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 1.1e-40 172.2 142 64.1
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 7.3e-40 169.5 191 50.3
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 3.6e-39 167.2 318 41.2
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 1.4e-38 165.2 178 55.6
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 3.1e-38 164.1 160 55.0
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 6.8e-38 162.9 165 57.6
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 8.9e-38 162.5 139 66.2
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.9e-36 157.5 131 67.2
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 4.1e-35 153.7 182 52.7
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 4.7e-31 140.2 171 47.4
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 8.0e-31 139.4 153 52.9
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 1.1e-30 139.0 163 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 6.8e-30 136.3 218 45.0
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 2.6e-29 134.4 171 45.0
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 2.3e-25 121.3 75 80.0
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 1.2e-23 115.5 71 81.7
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 6.8e-22 109.8 156 46.8
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 1.0e-17 95.9 56 83.9
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 1.3e-17 95.5 56 87.5
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 1.1e-16 92.4 154 42.2
MD12G1110100 Malus domestica HOM05D007148 ORTHO05D009047 1.1e-16 92.4 296 32.1
Lj5g0011331 Lotus japonicus HOM05D007148 ORTHO05D009047 4.3e-16 90.5 314 30.3
Medtr1g063080 Medicago truncatula HOM05D007148 ORTHO05D009047 2.8e-15 87.8 343 30.3
MD04G1092300 Malus domestica HOM05D007148 ORTHO05D009047 1.4e-14 85.5 308 29.9
Prupe.7G128700 Prunus persica HOM05D007148 ORTHO05D009047 1.4e-14 85.5 312 29.8
RcHm_v2.0_Chr3g0470391 Rosa chinensis HOM05D007148 ORTHO05D009047 8.9e-14 82.8 354 26.3
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 3.4e-13 80.9 50 78.0
Sabra06G0097500 Salix brachista HOM05D001037 ORTHO05D000888 5.8e-13 80.1 198 34.8
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 7.6e-13 79.7 269 32.0
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 1.3e-12 79.0 329 29.2
Duzib093G0361 Durio zibethinus HOM05D007148 ORTHO05D009047 3.8e-12 77.4 260 32.3
Potri.006G123300 Populus trichocarpa HOM05D007148 ORTHO05D009047 6.4e-12 76.6 328 27.7
Duzib128G0502 Durio zibethinus HOM05D007148 ORTHO05D009047 8.4e-12 76.3 253 31.2
FAN05G4699 Fragaria x ananassa HOM05D007148 ORTHO05D009047 1.4e-11 75.5 308 28.9
FvH4_6g16490 Fragaria vesca HOM05D007148 ORTHO05D009047 1.9e-11 75.1 269 31.2
Cpa.g.sc102.25 Carica papaya HOM05D007148 ORTHO05D009047 2.4e-11 74.7 292 30.8
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 2.4e-11 74.7 97 46.4
Atru.chr8.1789 Acer truncatum HOM05D007148 ORTHO05D009047 4.2e-11 73.9 112 44.6
FAN05G5619 Fragaria x ananassa HOM05D007148 ORTHO05D009047 4.2e-11 73.9 308 28.9
Dinv35791 Davidia involucrata HOM05D007148 ORTHO05D009047 9.3e-11 72.8 139 36.7
Psat6g073400 Pisum sativum HOM05D007148 ORTHO05D009047 1.6e-10 72.0 314 29.6
GSVIVG01033649001 Vitis vinifera HOM05D007148 ORTHO05D009047 1.6e-10 72.0 203 31.0
Glyma.13G141800 Glycine max HOM05D007148 ORTHO05D009047 2.1e-10 71.6 278 30.6
Thecc.05G068300 Theobroma cacao HOM05D007148 ORTHO05D009047 2.1e-10 71.6 265 30.2
FAN02G0401 Fragaria x ananassa HOM05D007148 ORTHO05D009047 4.6e-10 70.5 267 30.7
Lalb_Chr02g0155781 Lupinus albus HOM05D007148 ORTHO05D009047 4.6e-10 70.5 330 26.4
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 7.8e-10 69.7 309 28.8
TPR.G11276 Trifolium pratense HOM05D007148 ORTHO05D009047 7.8e-10 69.7 329 28.6
Phvul.007G147800 Phaseolus vulgaris HOM05D007148 ORTHO05D009047 1.3e-09 68.9 275 27.3
Ca_11512_v3 Cicer arietinum L. HOM05D000261 ORTHO05D009047 6.6e-09 66.6 313 27.8
TAR633G2546 Trochodendron aralioides HOM05D007148 ORTHO05D009047 1.1e-08 65.9 112 42.9
CSS0013124 Camellia sinensis var. sinensis HOM05D007148 ORTHO05D009047 2.5e-08 64.7 84 44.0
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 3.3e-08 64.3 287 27.2
Manes.08G011400 Manihot esculenta HOM05D007148 ORTHO05D009047 4.3e-08 63.9 345 25.2
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 5.6e-08 63.5 268 29.1
COL.COLO4_26948 Corchorus olitorius HOM05D007148 ORTHO05D009047 2.8e-07 61.2 223 31.4
Rhsim04G0144100 Rhododendron simsii HOM05D007148 ORTHO05D009047 2.8e-07 61.2 100 41.0
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 3.6e-07 60.8 81 51.9
VMungo0720G1794 Vigna mungo HOM05D007148 ORTHO05D009047 1.1e-06 59.3 323 27.9
Nitab4.5_0008624g0020 Nicotiana tabacum HOM05D007148 ORTHO05D009047 4.0e-06 57.4 122 36.1
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 4.0e-06 57.4 29 89.7


User provided reference genes

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