Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 7.1e-89 330.5 157 100.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 2.1e-40 169.5 95 88.4
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.1e-38 163.7 95 82.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 2.0e-38 162.9 95 84.2
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.6e-38 162.5 95 84.2
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.3e-37 157.9 95 82.1
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.1e-36 157.1 95 77.9
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-36 154.8 95 74.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-36 154.8 95 74.7
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-36 154.8 95 74.7
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-36 154.5 95 74.7
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-36 154.5 95 74.7
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.6e-35 153.3 95 76.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.0e-35 152.9 95 73.7
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-35 152.9 95 73.7
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.6e-35 152.5 95 80.0
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 3.5e-35 152.1 95 76.8
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.9e-35 151.4 95 77.9
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 5.9e-35 151.4 95 75.8
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.7e-35 151.0 95 73.7
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 7.7e-35 151.0 95 75.8
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 7.7e-35 151.0 96 79.2
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.3e-34 150.2 96 76.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.3e-34 150.2 95 76.8
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.7e-34 149.8 97 77.3
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.7e-34 149.8 95 72.6
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 5.0e-34 148.3 95 74.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 5.0e-34 148.3 95 74.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.0e-34 148.3 95 75.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.5e-34 147.9 95 73.7
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 8.5e-34 147.5 95 75.8
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.5e-34 147.5 95 75.8
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 8.5e-34 147.5 95 76.8
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.1e-33 147.1 95 77.9
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.5e-33 146.7 95 75.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.9e-33 146.4 96 76.0
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.5e-33 146.0 95 76.8
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 2.5e-33 146.0 95 75.8
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 3.2e-33 145.6 154 55.8
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 3.2e-33 145.6 95 76.8
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 3.2e-33 145.6 95 75.8
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 3.2e-33 145.6 95 74.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 3.2e-33 145.6 95 74.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.2e-33 145.6 95 72.6
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 4.2e-33 145.2 95 72.6
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.2e-33 145.2 95 74.7
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.2e-33 145.2 95 74.7
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.2e-33 145.2 95 74.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.5e-33 144.8 95 76.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 5.5e-33 144.8 95 75.8
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 7.2e-33 144.4 95 74.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 9.4e-33 144.1 95 72.6
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 9.4e-33 144.1 95 75.8
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 9.4e-33 144.1 95 74.7
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 1.2e-32 143.7 95 73.7
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.6e-32 143.3 95 72.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.1e-32 142.9 93 75.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 3.6e-32 142.1 95 74.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.7e-32 141.7 95 74.7
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 4.7e-32 141.7 95 71.6
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.1e-32 141.4 95 71.6
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 6.1e-32 141.4 95 74.7
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 6.1e-32 141.4 95 72.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 6.1e-32 141.4 95 72.6
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 8.0e-32 141.0 95 73.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.0e-31 140.6 95 69.5
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-31 140.2 95 66.3
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-31 140.2 95 66.3
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-31 140.2 95 66.3
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-31 140.2 95 73.7
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.4e-31 140.2 95 73.7
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.8e-31 139.8 95 71.6
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.0e-31 138.7 95 68.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.0e-31 138.7 95 72.6
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.0e-31 138.7 95 72.6
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 4.0e-31 138.7 97 70.1
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 5.2e-31 138.3 95 71.6
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 5.2e-31 138.3 95 71.6
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 5.2e-31 138.3 95 70.5
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 5.2e-31 138.3 95 72.6
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 5.2e-31 138.3 95 71.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.7e-31 137.9 95 70.5
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 6.7e-31 137.9 95 71.6
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 6.7e-31 137.9 95 71.6
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 6.7e-31 137.9 95 70.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 6.7e-31 137.9 95 72.6
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 8.8e-31 137.5 96 67.7
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.8e-31 137.5 95 71.6
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 8.8e-31 137.5 95 67.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.8e-31 137.5 95 71.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-30 137.1 95 65.3
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.5e-30 136.7 95 71.6
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.5e-30 136.7 95 71.6
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.0e-30 136.3 98 71.4
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.6e-30 136.0 95 70.5
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.6e-30 136.0 95 70.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.6e-30 136.0 95 71.6
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.6e-30 136.0 96 70.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.6e-30 136.0 97 69.1
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 3.3e-30 135.6 93 73.1
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 3.3e-30 135.6 93 73.1
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.3e-30 135.6 95 70.5
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 3.3e-30 135.6 93 71.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 5.7e-30 134.8 95 70.5
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.7e-30 134.8 93 72.0
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 5.7e-30 134.8 95 65.3
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 5.7e-30 134.8 95 69.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 7.5e-30 134.4 93 73.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 7.5e-30 134.4 95 71.6
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 7.5e-30 134.4 95 69.5
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.3e-29 133.7 95 68.4
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.7e-29 133.3 93 71.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.8e-29 132.5 95 69.5
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 2.8e-29 132.5 94 69.1
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.7e-29 132.1 95 68.4
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.7e-29 132.1 95 68.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 3.7e-29 132.1 95 72.6
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.8e-28 129.8 95 71.6
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 3.1e-28 129.0 102 67.6
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 5.9e-27 124.8 95 63.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 7.7e-27 124.4 97 64.9
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.0e-26 124.0 95 64.2
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.0e-26 124.0 95 67.4
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.0e-26 124.0 95 64.2
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.0e-26 124.0 95 64.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.3e-26 123.6 96 64.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 2.2e-26 122.9 98 64.3
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 2.9e-26 122.5 96 65.6
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 5.0e-26 121.7 95 62.1
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.9e-25 119.8 96 61.5
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.2e-25 119.0 87 70.1
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 7.2e-25 117.9 97 59.8
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 6.8e-23 111.3 95 63.2
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.2e-21 106.3 95 56.8
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.7e-21 105.5 95 54.7
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 5.4e-20 101.7 57 80.7
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 8.6e-18 94.4 95 49.5
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.2e-17 92.0 88 54.5
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 5.5e-17 91.7 122 41.0
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.4e-15 87.0 90 54.4
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.4e-15 87.0 41 97.6
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.8e-13 79.3 71 60.6
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 4.9e-13 78.6 97 44.3
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 7.8e-11 71.2 34 94.1
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 6.6e-10 68.2 71 42.3
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 4.7e-08 62.0 90 40.0


User provided reference genes

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