Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p001714 Quercus lobata HOM05D016498 ORTHO05D000004 3.6e-137 491.5 238 100.0
QL04p079954 Quercus lobata HOM05D016498 ORTHO05D000167 3.6e-28 129.4 73 87.7
QL04p022409 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-23 112.5 81 60.5
QL07p013368 Quercus lobata HOM05D000003 ORTHO05D000004 8.4e-17 91.7 172 30.8
QL05p007523 Quercus lobata HOM05D000003 ORTHO05D000167 5.4e-16 89.0 260 29.2
QL10p030412 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-14 84.0 249 32.9
QL09p043312 Quercus lobata HOM05D000003 ORTHO05D000167 8.7e-14 81.6 94 48.9
QL01p048703 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-13 80.9 302 25.2
QL03p051231 Quercus lobata HOM05D016498 ORTHO05D000167 7.4e-13 78.6 96 46.9
QL02p034159 Quercus lobata HOM05D016498 ORTHO05D000167 1.3e-12 77.8 81 49.4
QL05p076321 Quercus lobata HOM05D000003 ORTHO05D000004 6.2e-12 75.5 87 39.1
QL07p011546 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-11 73.9 82 46.3
QL02p087863 Quercus lobata HOM05D000003 ORTHO05D000004 3.1e-11 73.2 66 42.4
QL04p080096 Quercus lobata HOM05D016498 ORTHO05D000167 4.0e-11 72.8 40 90.0
QL08p031025 Quercus lobata HOM05D000003 ORTHO05D000004 4.0e-11 72.8 217 26.3
QL02p007660 Quercus lobata HOM05D000003 ORTHO05D000004 4.5e-10 69.3 60 45.0
QL12p032525 Quercus lobata HOM05D000003 ORTHO05D000167 4.5e-10 69.3 66 42.4
CiPaw.08G150600 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.0e-09 68.2 64 42.2
QL08p006218 Quercus lobata HOM05D000003 ORTHO05D000167 1.7e-09 67.4 82 42.7
CANSAT01G1506 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-09 67.0 282 23.0
QL08p045811 Quercus lobata HOM05D031275 ORTHO05D000167 2.2e-09 67.0 236 27.1
QL10p036891 Quercus lobata HOM05D000003 ORTHO05D000004 2.2e-09 67.0 87 37.9
QL08p063982 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-09 66.6 60 38.3
QL12p024011 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-09 66.6 63 44.4
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-09 66.2 85 37.6
QL03p054973 Quercus lobata HOM05D016498 ORTHO05D000167 3.8e-09 66.2 82 43.9
QL05p017790 Quercus lobata HOM05D000003 ORTHO05D000167 3.8e-09 66.2 60 41.7
QL12p015728 Quercus lobata HOM05D000003 ORTHO05D000167 3.8e-09 66.2 63 41.3
QL04p065270 Quercus lobata HOM05D000003 ORTHO05D000004 4.9e-09 65.9 87 34.5
QL11p000147 Quercus lobata HOM05D000003 ORTHO05D000167 4.9e-09 65.9 75 49.3
QL04p038525 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-09 65.5 83 42.2
QL04p096362 Quercus lobata HOM05D000003 ORTHO05D000004 8.4e-09 65.1 63 41.3
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 64.7 103 34.0
QL05p030558 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-08 64.7 85 34.1
QL05p073919 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-08 64.7 60 43.3
QL12p001149 Quercus lobata HOM05D000003 ORTHO05D000167 1.1e-08 64.7 82 45.1
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 60 45.0
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 1.4e-08 64.3 60 40.0
QL04p055697 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-08 64.3 62 41.9
QL11p037218 Quercus lobata HOM05D000130 ORTHO05D000004 1.4e-08 64.3 60 41.7
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-08 63.9 314 25.5
Atru.chr3.1850 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-08 63.5 59 44.1
Atru.chr7.1974 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-08 63.5 83 34.9
QL02p036374 Quercus lobata HOM05D000003 ORTHO05D000004 2.5e-08 63.5 60 41.7
QL05p039752 Quercus lobata HOM05D000003 ORTHO05D000004 2.5e-08 63.5 87 33.3
QL01p017614 Quercus lobata HOM05D000003 ORTHO05D000004 4.2e-08 62.8 63 47.6
Atru.chr10.2102 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-08 62.4 63 44.4
CANSAT56G3286 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-08 62.4 61 44.3
QL05p014002 Quercus lobata HOM05D000003 ORTHO05D000004 5.5e-08 62.4 65 46.2
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-08 62.0 276 24.6
CANSAT25G3896 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-08 62.0 61 44.3
QL02p011750 Quercus lobata HOM05D000003 ORTHO05D000004 7.1e-08 62.0 60 46.7
QL05p002207 Quercus lobata HOM05D000003 ORTHO05D000167 7.1e-08 62.0 60 41.7
Atru.chr12.350 Acer truncatum HOM05D000003 ORTHO05D000167 9.3e-08 61.6 53 47.2
Lj7C747G6 Lonicera japonica HOM05D000003 ORTHO05D000004 9.3e-08 61.6 65 38.5
QL04p058624 Quercus lobata HOM05D000003 ORTHO05D000004 9.3e-08 61.6 60 46.7
QL05p078226 Quercus lobata HOM05D000003 ORTHO05D000004 9.3e-08 61.6 60 36.7
QL12p029380 Quercus lobata HOM05D000003 ORTHO05D000004 9.3e-08 61.6 77 36.4
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-07 61.2 280 26.4
QL05p029769 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-07 61.2 60 38.3
QL05p030108 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-07 61.2 60 38.3
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-07 61.2 60 40.0
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-07 60.8 57 47.4
Atru.chr2.2282 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-07 60.8 58 46.6
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-07 60.8 68 38.2
Atru.chr8.695 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-07 60.8 275 26.9
QL05p018687 Quercus lobata HOM05D000106 ORTHO05D000160 1.6e-07 60.8 63 36.5
QL12p022431 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-07 60.8 61 44.3
Atru.chr10.433 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 68 41.2
Atru.chr11.1421 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 293 26.3
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 99 33.3
Atru.chr3.3369 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-07 60.5 261 24.1
Atru.chr4.252 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 57 47.4
Atru.chr5.1740 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 59 37.3
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 62 41.9
Atru.chr9.813 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 57 47.4
QL09p016157 Quercus lobata HOM05D000003 ORTHO05D000004 2.1e-07 60.5 82 35.4
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 2.7e-07 60.1 148 29.1
CANSAT11G0021 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-07 60.1 81 34.6
QL02p009216 Quercus lobata HOM05D000003 ORTHO05D000167 2.7e-07 60.1 60 38.3
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 2.7e-07 60.1 83 41.0
CiPaw.15G109000 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.5e-07 59.7 81 34.6
QL08p036626 Quercus lobata HOM05D000834 ORTHO05D000909 3.5e-07 59.7 60 38.3
Atru.chr13.1151 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-07 58.9 71 35.2
Atru.chr7.1911 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-07 58.9 61 45.9
CANSAT64G0477 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-07 58.9 65 36.9
QL01p039135 Quercus lobata HOM05D000003 ORTHO05D000006 6.0e-07 58.9 60 40.0
QL04p053099 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-07 58.9 60 46.7
QL05p002907 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-07 58.9 60 38.3
QL05p042365 Quercus lobata HOM05D000003 ORTHO05D000167 6.0e-07 58.9 78 37.2
QL11p056495 Quercus lobata HOM05D000003 ORTHO05D000167 6.0e-07 58.9 55 45.5
Atru.chr2.1817 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-07 58.5 62 38.7
CANSAT21G2012 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-07 58.5 255 22.7
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.9e-07 58.5 64 37.5
CiPaw.15G051200 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.9e-07 58.5 85 32.9
CiPaw.16G069900 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.9e-07 58.5 62 40.3
QL04p009936 Quercus lobata HOM05D000003 ORTHO05D000167 7.9e-07 58.5 60 43.3
QL06p019561 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-07 58.5 63 34.9
QL09p000395 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-07 58.5 61 37.7
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-07 58.5 60 43.3
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 7.9e-07 58.5 68 35.3
Atru.chr6.887 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 58.2 60 45.0
FvH4_4g13062 Fragaria vesca HOM05D000003 ORTHO05D011454 1.0e-06 58.2 65 36.9
Lj1C50T12 Lonicera japonica HOM05D000003 ORTHO05D000004 1.0e-06 58.2 61 36.1
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 1.0e-06 58.2 68 35.3
QL08p047630 Quercus lobata HOM05D000003 ORTHO05D000004 1.0e-06 58.2 60 36.7
QL11p055311 Quercus lobata HOM05D000003 ORTHO05D000004 1.0e-06 58.2 61 32.8
QL93p0205_0033 Quercus lobata HOM05D000003 ORTHO05D000004 1.0e-06 58.2 81 32.1
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 60 40.0
Atru.chr12.1953 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 83 34.9
CANSAT01G0882 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-06 57.8 86 33.7
QL05p054117 Quercus lobata HOM05D016498 ORTHO05D000167 1.3e-06 57.8 82 45.1
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-06 57.4 60 38.3
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-06 57.4 68 38.2
CANSAT35G0340 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-06 57.4 119 31.9
CANSAT56G0865 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 57.4 60 45.0
QL03p065273 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-06 57.4 77 31.2
QL08p018981 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-06 57.4 210 25.7
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 57.0 59 45.8
Atru.chr2.2371 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 59 44.1
Atru.chr3.1273 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 57.0 57 49.1
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 58 39.7
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 62 38.7
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 59 42.4
CANSAT35G0201 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-06 57.0 258 20.9
QL01p000225 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-06 57.0 64 37.5
QL07p039728 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-06 57.0 56 39.3
Lj5P270T39 Lonicera japonica HOM05D000003 ORTHO05D000004 3.0e-06 56.6 61 42.6
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 3.0e-06 56.6 60 41.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-06 56.6 60 36.7
TAR256G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.0e-06 56.6 59 40.7
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 3.9e-06 56.2 65 40.0
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 56.2 67 35.8
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-06 56.2 63 36.5
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 56.2 81 33.3
QL03p005847 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 56.2 59 40.7
QL04p073918 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 56.2 60 33.3
QL08p025789 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 56.2 67 35.8
QL10p017193 Quercus lobata HOM05D000003 ORTHO05D000167 3.9e-06 56.2 89 36.0
TAR164G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.9e-06 56.2 60 40.0
Atru.chr1.1374 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-06 55.8 55 41.8
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 5.1e-06 55.8 65 40.0
Atru.chr3.2872 Acer truncatum HOM05D000003 ORTHO05D000167 5.1e-06 55.8 82 36.6
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-06 55.8 57 35.1
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 55.8 116 31.0
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 55.8 60 43.3
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.1e-06 55.8 64 42.2
QL07p017810 Quercus lobata HOM05D000003 ORTHO05D000004 5.1e-06 55.8 81 29.6
QL10p021387 Quercus lobata HOM05D000003 ORTHO05D000004 5.1e-06 55.8 60 35.0
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-06 55.5 81 34.6
Atru.chr8.1595 Acer truncatum HOM05D000003 ORTHO05D000167 6.7e-06 55.5 70 37.1
CANSAT11G1435 Cannabis sativa HOM05D000003 ORTHO05D000167 6.7e-06 55.5 60 35.0
CANSAT56G4495 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 55.5 82 32.9
Atru.chr13.2108 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-06 55.1 72 38.9
Atru.chr3.2538 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-06 55.1 59 37.3
Atru.chr8.1655 Acer truncatum HOM05D000003 ORTHO05D000167 8.7e-06 55.1 111 29.7
Atru.chr9.913 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-06 55.1 80 37.5
QL03p020372 Quercus lobata HOM05D000003 ORTHO05D000004 8.7e-06 55.1 60 38.3
QL05p056721 Quercus lobata HOM05D000003 ORTHO05D000004 8.7e-06 55.1 60 33.3
QL07p004262 Quercus lobata HOM05D000003 ORTHO05D000004 8.7e-06 55.1 68 35.3
QL09p019629 Quercus lobata HOM05D000003 ORTHO05D000004 8.7e-06 55.1 63 33.3
RcHm_v2.0_Chr7g0182091 Rosa chinensis HOM05D000003 ORTHO05D000004 8.7e-06 55.1 61 39.3


User provided reference genes

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