Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.9e-196 688.3 341 100.0
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.0e-192 675.6 340 97.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.0e-153 545.4 338 81.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 4.4e-152 541.6 351 77.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 2.2e-151 539.3 342 78.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.4e-150 535.8 343 77.6
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.2e-150 535.4 344 77.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 5.4e-150 534.6 342 77.8
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-149 533.5 344 77.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.6e-149 533.1 335 77.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 3.5e-149 531.9 347 77.8
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 3.5e-149 531.9 344 76.5
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 4.6e-149 531.6 339 78.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.7e-148 529.6 341 78.0
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.9e-148 528.5 344 77.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.9e-148 528.5 344 77.3
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 6.6e-148 527.7 342 77.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.9e-147 526.2 340 77.6
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.6e-147 524.6 347 76.1
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.8e-146 522.3 339 76.4
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.3e-145 519.2 344 76.2
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.0e-145 518.5 345 75.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.2e-145 518.1 339 76.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.5e-144 516.5 335 77.6
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-144 515.8 341 75.7
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-144 515.8 341 75.7
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 5.8e-144 514.6 355 73.5
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 7.5e-144 514.2 338 75.4
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 9.8e-144 513.8 271 88.2
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.7e-143 513.1 341 74.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.9e-143 512.3 344 75.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 8.3e-143 510.8 336 75.3
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-142 510.4 345 73.6
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 9.2e-142 507.3 337 75.4
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.6e-141 506.5 341 74.5
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.6e-141 506.5 336 74.7
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 3.5e-141 505.4 271 87.5
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 3.5e-141 505.4 334 74.6
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 4.6e-141 505.0 336 74.7
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 6.0e-141 504.6 345 73.0
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 6.0e-141 504.6 340 74.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.7e-140 503.1 308 79.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.7e-140 503.1 341 74.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.3e-140 502.7 268 86.2
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.0e-140 502.3 342 73.7
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.0e-140 502.3 352 72.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 6.6e-140 501.1 340 74.4
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.6e-140 501.1 267 88.4
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 6.6e-140 501.1 308 78.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.1e-139 500.4 341 73.6
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-139 500.0 345 72.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-139 500.0 345 72.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 2.5e-139 499.2 345 73.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-139 498.8 343 71.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 3.3e-139 498.8 339 73.7
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.3e-139 498.4 332 73.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 7.3e-139 497.7 343 71.4
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.3e-139 497.7 339 73.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 9.5e-139 497.3 341 72.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-138 496.9 343 71.7
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.1e-138 496.1 310 77.7
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 6.2e-138 494.6 339 72.6
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 8.1e-138 494.2 268 85.1
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.8e-137 493.0 344 71.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.8e-137 493.0 262 86.6
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.3e-137 492.7 346 72.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 6.8e-137 491.1 341 71.8
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-136 489.6 343 71.1
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-136 489.6 343 71.1
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-136 489.6 338 71.3
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 2.0e-136 489.6 337 73.3
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.6e-136 489.2 291 79.4
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.4e-136 488.8 337 71.5
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 3.4e-136 488.8 260 85.8
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 5.8e-136 488.0 297 79.5
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.5e-136 487.6 332 72.9
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 7.5e-136 487.6 342 73.1
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 9.8e-136 487.3 340 70.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 9.8e-136 487.3 342 72.8
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.3e-135 486.9 333 72.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-135 486.9 340 71.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.3e-135 486.9 332 72.0
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.2e-135 486.1 337 71.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.2e-135 486.1 337 71.2
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.9e-135 485.7 338 70.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.7e-135 485.3 331 71.3
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.9e-135 485.0 262 85.5
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 8.3e-135 484.2 262 85.5
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.1e-134 483.8 262 85.1
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.4e-134 482.6 333 74.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-134 482.3 308 76.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 4.1e-134 481.9 332 71.7
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 9.2e-134 480.7 341 68.9
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.6e-133 479.9 276 82.6
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.7e-133 479.2 344 69.2
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.5e-133 478.8 326 74.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.6e-133 478.4 342 70.8
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.3e-132 476.9 332 71.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.3e-132 476.1 337 70.6
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 8.6e-132 474.2 339 69.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-131 473.4 301 76.1
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.5e-131 472.6 262 84.7
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.3e-131 471.9 270 81.9
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.6e-131 471.5 301 76.1
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.2e-130 470.3 334 71.3
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.2e-130 470.3 319 71.5
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.2e-130 470.3 241 90.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.8e-130 469.2 334 71.0
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.8e-129 464.5 346 69.4
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.6e-128 462.6 342 69.0
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 9.9e-128 460.7 265 81.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.9e-126 456.4 334 68.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 7.1e-126 454.5 241 86.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-124 449.9 347 66.3
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.5e-123 446.0 342 67.0
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.1e-122 443.0 233 88.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 9.9e-120 434.1 264 77.3
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 4.6e-117 425.2 340 62.1
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.0e-116 424.1 246 83.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.3e-116 422.9 217 88.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 8.7e-116 421.0 273 72.9
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.6e-114 416.8 220 86.4
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.8e-114 415.2 216 88.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 5.3e-113 411.8 217 85.7
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 9.0e-113 411.0 345 62.0
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.4e-112 408.7 218 86.2
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 4.2e-110 402.1 218 84.9
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.3e-107 392.1 338 61.2
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 3.6e-106 389.0 208 86.1
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.4e-105 386.3 339 60.5
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.3e-103 380.6 266 68.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.6e-101 373.6 217 77.0
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 4.5e-96 355.5 336 55.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.7e-95 353.6 300 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.4e-89 334.0 335 53.1
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.5e-86 322.0 249 67.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.9e-80 302.0 233 61.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.3e-79 300.8 159 87.4
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.6e-77 292.4 154 87.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.1e-73 279.6 217 65.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 6.9e-73 278.5 216 67.1
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.2e-71 273.5 219 66.2
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.2e-70 269.6 252 57.1
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.6e-69 267.3 147 83.0
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.3e-68 263.5 218 64.2
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.0e-55 221.5 129 78.3
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.0e-49 198.7 147 65.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-41 174.5 180 53.9
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.1e-20 105.1 124 53.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.3e-18 98.2 81 59.3
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.2e-16 91.7 123 49.6
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.9e-15 86.7 138 41.3
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 8.6e-15 85.5 49 73.5


User provided reference genes

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