Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p104266 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-101 372.5 185 100.0
QL03p014985 Quercus lobata HOM05D001365 ORTHO05D001291 3.9e-46 188.7 232 50.9
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-39 167.2 148 66.9
QL04p066053 Quercus lobata HOM05D000176 ORTHO05D000106 4.8e-36 155.2 256 41.4
QL93p0164_0014 Quercus lobata HOM05D000176 ORTHO05D000106 4.8e-36 155.2 256 41.4
QL93p0200_0009 Quercus lobata HOM05D002775 ORTHO05D003262 4.8e-36 155.2 256 41.4
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-35 153.3 256 41.0
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 5.9e-34 148.3 240 43.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 6.5e-33 144.8 217 46.5
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 8.5e-33 144.4 267 39.0
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-32 144.1 149 58.4
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 2.7e-31 139.4 249 41.0
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-31 139.0 267 38.2
QL93p2017_0003 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-31 139.0 267 38.2
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.8e-30 136.7 220 44.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 2.6e-29 132.9 224 41.5
QL09p045040 Quercus lobata HOM05D000394 ORTHO05D000299 3.3e-29 132.5 112 67.9
QL08p016922 Quercus lobata HOM05D000325 ORTHO05D002025 4.4e-29 132.1 240 39.6
QL05p078397 Quercus lobata HOM05D000070 ORTHO05D000106 5.7e-29 131.7 117 60.7
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 4.8e-28 128.6 82 76.8
QL01p023632 Quercus lobata HOM05D000176 ORTHO05D000106 8.2e-28 127.9 219 43.4
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 8.2e-28 127.9 82 75.6
QL03p015444 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-27 127.1 82 75.6
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 1.4e-27 127.1 263 38.8
QL08p003473 Quercus lobata HOM05D000176 ORTHO05D005465 5.0e-25 118.6 263 36.9
QL05p012302 Quercus lobata HOM05D002292 ORTHO05D012672 1.9e-24 116.7 104 59.6
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-24 115.9 261 36.4
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-24 115.9 260 36.5
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 7.2e-24 114.8 84 70.2
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-22 110.5 85 67.1
QL04p053141 Quercus lobata HOM05D000176 ORTHO05D000106 2.3e-22 109.8 227 37.0
QL12p023375 Quercus lobata HOM05D000176 ORTHO05D000106 2.3e-22 109.8 242 35.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-22 109.4 265 35.8
QL06p040368 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-22 109.0 242 35.5
QL12p031843 Quercus lobata HOM05D000176 ORTHO05D000106 4.0e-22 109.0 227 37.0
QL02p053683 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-21 107.5 226 37.2
QL09p000522 Quercus lobata HOM05D000176 ORTHO05D004343 3.5e-18 95.9 189 41.3
QL06p009325 Quercus lobata HOM05D000622 ORTHO05D000475 2.3e-14 83.2 204 36.8
QL08p010479 Quercus lobata HOM05D000062 ORTHO05D001642 2.3e-14 83.2 41 90.2
MD03G1201800 Malus domestica HOM05D000062 ORTHO05D001642 1.4e-11 73.9 41 82.9
Haze_09672 Corylus avellana HOM05D000062 ORTHO05D001642 1.8e-11 73.6 41 80.5
MD11G1218900 Malus domestica HOM05D000062 ORTHO05D001642 3.1e-11 72.8 41 80.5
Prupe.4G212200 Prunus persica HOM05D000062 ORTHO05D001642 7.0e-11 71.6 41 75.6
CiPaw.11G188900 Carya illinoinensis HOM05D000062 ORTHO05D001642 9.1e-11 71.2 41 78.0
TAR626G1603 Trochodendron aralioides HOM05D000062 ORTHO05D001642 1.6e-10 70.5 40 77.5
MD03G1201700 Malus domestica HOM05D000062 ORTHO05D001642 2.7e-10 69.7 41 78.0
RcHm_v2.0_Chr5g0039371 Rosa chinensis HOM05D000062 ORTHO05D001642 2.7e-10 69.7 39 76.9
Cpa.g.sc152.1 Carica papaya HOM05D000062 ORTHO05D001642 5.9e-10 68.6 40 75.0
Duzib268G0356 Durio zibethinus HOM05D000062 ORTHO05D001642 5.9e-10 68.6 40 77.5
Eucgr.F00767 Eucalyptus grandis HOM05D000062 ORTHO05D001642 7.7e-10 68.2 41 75.6
Gohir.A08G019800 Gossypium hirsutum HOM05D000062 ORTHO05D001642 1.3e-09 67.4 40 75.0
Gorai.004G027900 Gossypium raimondii HOM05D000062 ORTHO05D001642 1.3e-09 67.4 40 75.0
CiPaw.10G070200 Carya illinoinensis HOM05D000062 ORTHO05D001642 2.3e-09 66.6 40 70.0
Peaxi162Scf00262g01012 Petunia axillaris HOM05D000062 ORTHO05D001642 2.3e-09 66.6 40 70.0
FAN11G3676 Fragaria x ananassa HOM05D000062 ORTHO05D001642 2.9e-09 66.2 39 76.9
FAN25G0183 Fragaria x ananassa HOM05D000062 ORTHO05D001642 2.9e-09 66.2 39 76.9
Manes.03G128900 Manihot esculenta HOM05D000062 ORTHO05D001642 2.9e-09 66.2 41 70.7
Sabra11G0125000 Salix brachista HOM05D000062 ORTHO05D001642 2.9e-09 66.2 41 70.7
CSS0005717 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D001642 3.8e-09 65.9 40 70.0
CSS0023356 Camellia sinensis var. sinensis HOM05D000062 ORTHO05D001642 3.8e-09 65.9 40 70.0
MELO3C026698.2 Cucumis melo HOM05D000062 ORTHO05D001642 3.8e-09 65.9 41 73.2
CsaV3_3G022450 Cucumis sativus L. HOM05D000062 ORTHO05D001642 3.8e-09 65.9 41 73.2
Gohir.D08G030300 Gossypium hirsutum HOM05D000062 ORTHO05D001642 3.8e-09 65.9 40 72.5
Manes.15G072300 Manihot esculenta HOM05D000062 ORTHO05D001642 3.8e-09 65.9 41 68.3
PGR083G0404 Punica granatum HOM05D000062 ORTHO05D001642 3.8e-09 65.9 41 70.7
Rhsim13G0154700 Rhododendron simsii HOM05D000062 ORTHO05D001642 3.8e-09 65.9 40 70.0
Duzib213G0746 Durio zibethinus HOM05D000062 ORTHO05D001642 5.0e-09 65.5 40 72.5
FvH4_3g22620 Fragaria vesca HOM05D000062 ORTHO05D001642 5.0e-09 65.5 39 76.9
Potri.011G139100 Populus trichocarpa HOM05D000062 ORTHO05D001642 5.0e-09 65.5 41 73.2
Sed0001814 Sechium edule HOM05D000062 ORTHO05D001642 5.0e-09 65.5 41 70.7
CANSAT11G2332 Cannabis sativa HOM05D000062 ORTHO05D001642 6.5e-09 65.1 41 73.2
Haze_06790 Corylus avellana HOM05D000062 ORTHO05D001642 6.5e-09 65.1 40 67.5
Phvul.006G042400 Phaseolus vulgaris HOM05D000062 ORTHO05D001642 6.5e-09 65.1 41 70.7
Psat2g011080 Pisum sativum HOM05D000062 ORTHO05D001642 6.5e-09 65.1 40 70.0
Thecc.07G038000 Theobroma cacao HOM05D000062 ORTHO05D001642 6.5e-09 65.1 40 72.5
Thecc.07G038100 Theobroma cacao HOM05D000062 ORTHO05D001642 6.5e-09 65.1 40 72.5
Migut.M01310 Erythranthe guttata HOM05D000062 ORTHO05D001642 8.6e-09 64.7 40 62.5
Hma1.2p1_1142F.1_g260980 Hydrangea macrophylla HOM05D000062 ORTHO05D001642 8.6e-09 64.7 40 67.5
LjContig00272g0008050 Lotus japonicus HOM05D000062 ORTHO05D001642 1.1e-08 64.3 40 67.5
Oeu033199.2 Olea europaea HOM05D000062 ORTHO05D001642 1.1e-08 64.3 40 67.5
Sed0026475 Sechium edule HOM05D000062 ORTHO05D001642 1.1e-08 64.3 41 70.7
Ca_06316_v3 Cicer arietinum L. HOM05D000062 ORTHO05D001642 1.5e-08 63.9 40 67.5
ClCG05G014290 Citrullus lanatus HOM05D000062 ORTHO05D001642 1.5e-08 63.9 41 70.7
FAN16G1714 Fragaria x ananassa HOM05D000062 ORTHO05D001642 1.5e-08 63.9 39 74.4
FAN21G1937 Fragaria x ananassa HOM05D000062 ORTHO05D001642 1.5e-08 63.9 39 74.4
PSO541G4305 Papaver somniferum HOM05D000062 ORTHO05D001642 1.5e-08 63.9 40 70.0
VMungo0540G1469 Vigna mungo HOM05D000062 ORTHO05D001642 1.5e-08 63.9 41 70.7
Dinv13884 Davidia involucrata HOM05D000062 ORTHO05D001642 1.9e-08 63.5 40 65.0
Lj2C269T11 Lonicera japonica HOM05D000062 ORTHO05D001642 1.9e-08 63.5 40 65.0
Medtr5g092570 Medicago truncatula HOM05D000062 ORTHO05D001642 1.9e-08 63.5 40 67.5
PSO675G3147 Papaver somniferum HOM05D000062 ORTHO05D001642 1.9e-08 63.5 40 67.5
QL05p073492 Quercus lobata HOM05D000062 ORTHO05D001642 1.9e-08 63.5 40 65.0
DCAR_004213 Daucus carota HOM05D000062 ORTHO05D001642 2.5e-08 63.2 40 60.0
Aqoxy1G02183 Aquilegia oxysepala HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 70.0
CAN.G569.13 Capsicum annuum HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Duzib235G1152 Durio zibethinus HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Glyma.08G315300 Glycine max HOM05D000062 ORTHO05D001642 3.2e-08 62.8 41 70.7
Lj6g0017279 Lotus japonicus HOM05D000062 ORTHO05D001642 3.2e-08 62.8 41 70.7
Nitab4.5_0003254g0040 Nicotiana tabacum HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Nitab4.5_0006137g0050 Nicotiana tabacum HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Solyc02g080470.3 Solanum lycopersicum HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Sopen02g025150 Solanum pennellii HOM05D000062 ORTHO05D001642 3.2e-08 62.8 40 65.0
Glyma.18G098800 Glycine max HOM05D000062 ORTHO05D001642 4.2e-08 62.4 41 70.7
MBI02_g22116_MAGBIO Magnolia biondii HOM05D000062 ORTHO05D001642 4.2e-08 62.4 40 62.5
Nn5g29366 Nelumbo nucifera HOM05D000062 ORTHO05D001642 4.2e-08 62.4 40 70.0
QL05p073729 Quercus lobata HOM05D000062 ORTHO05D001642 4.2e-08 62.4 40 65.0
HanXRQChr09g0248431 Helianthus annuus HOM05D000062 ORTHO05D001642 5.5e-08 62.0 40 60.0
QL11p043362 Quercus lobata HOM05D000176 ORTHO05D000106 5.5e-08 62.0 82 46.3
TWI39G0577 Tripterygium wilfordii HOM05D000062 ORTHO05D001642 5.5e-08 62.0 41 70.7
VMungo0647G0896 Vigna mungo HOM05D000062 ORTHO05D001642 5.5e-08 62.0 41 63.4
Atru.chr2.3351 Acer truncatum HOM05D000062 ORTHO05D001642 7.2e-08 61.6 40 65.0
Ca_14725_v3 Cicer arietinum L. HOM05D000062 ORTHO05D001642 7.2e-08 61.6 41 65.9
Ciclev10014383m.g Citrus clementina HOM05D000062 ORTHO05D001642 7.2e-08 61.6 40 65.0
COL.COLO4_31759 Corchorus olitorius HOM05D000062 ORTHO05D001642 9.5e-08 61.2 40 67.5
Dinv20041 Davidia involucrata HOM05D000062 ORTHO05D001642 9.5e-08 61.2 40 62.5
HanXRQChr16g0515971 Helianthus annuus HOM05D000062 ORTHO05D001642 9.5e-08 61.2 40 62.5
arahy.Tifrunner.gnm1.ann1.FB5GTI Arachis hypogaea HOM05D000062 ORTHO05D001642 1.2e-07 60.8 41 68.3
Glyma.14G024200 Glycine max HOM05D000062 ORTHO05D001642 1.2e-07 60.8 41 63.4
Medtr3g051300 Medicago truncatula HOM05D000062 ORTHO05D001642 1.2e-07 60.8 41 68.3
Potri.004G016700 Populus trichocarpa HOM05D000062 ORTHO05D001642 1.2e-07 60.8 40 62.5
SHI26616 Sapria himalayana HOM05D000062 ORTHO05D001642 1.2e-07 60.8 41 68.3
Atru.chr10.2208 Acer truncatum HOM05D000062 ORTHO05D001642 1.6e-07 60.5 40 65.0
ATR0752G122 Amborella trichopoda HOM05D000062 ORTHO05D001642 1.6e-07 60.5 41 61.0
HanXRQChr15g0471021 Helianthus annuus HOM05D000062 ORTHO05D001642 1.6e-07 60.5 40 62.5
Sabra04G0009000 Salix brachista HOM05D000062 ORTHO05D001642 1.6e-07 60.5 40 62.5
arahy.Tifrunner.gnm1.ann1.YU1WDM Arachis hypogaea HOM05D000062 ORTHO05D001642 2.1e-07 60.1 41 68.3
AUR62021966 Chenopodium quinoa HOM05D000062 ORTHO05D001642 2.1e-07 60.1 40 57.5
HanXRQChr05g0129571 Helianthus annuus HOM05D000062 ORTHO05D001642 2.1e-07 60.1 40 60.0
SalBow8G1933 Salvia bowleyana HOM05D000062 ORTHO05D001642 2.8e-07 59.7 40 60.0
THA.LOC104809506 Tarenaya hassleriana HOM05D000062 ORTHO05D001642 2.8e-07 59.7 39 64.1
BcaNung04808 Brassica carinata HOM05D000062 ORTHO05D001642 3.6e-07 59.3 41 61.0
C05p09780 Brassica napus HOM05D000062 ORTHO05D001642 3.6e-07 59.3 41 61.0
BolC5t29719H Brassica oleracea HOM05D000062 ORTHO05D001642 3.6e-07 59.3 41 61.0
BraA06t24022Z Brassica rapa HOM05D000062 ORTHO05D001642 3.6e-07 59.3 41 61.0
Hund21402 Selenicereus undatus HOM05D000062 ORTHO05D001642 3.6e-07 59.3 40 65.0
TPR.G1158 Trifolium pratense HOM05D000062 ORTHO05D001642 3.6e-07 59.3 40 65.0
TPR.G16584 Trifolium pratense HOM05D000062 ORTHO05D001642 3.6e-07 59.3 41 65.9
A06p08220 Brassica napus HOM05D000062 ORTHO05D001642 4.7e-07 58.9 41 61.0
TWI38G0378 Tripterygium wilfordii HOM05D000062 ORTHO05D001642 4.7e-07 58.9 41 65.9
Ciclev10007538m.g Citrus clementina HOM05D000062 ORTHO05D001642 6.1e-07 58.5 40 62.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.1e-07 58.5 58 58.6
AL1G22800 Arabidopsis lyrata HOM05D000062 ORTHO05D001642 8.0e-07 58.2 41 63.4
AT1G11660 Arabidopsis thaliana HOM05D000062 ORTHO05D001642 8.0e-07 58.2 41 63.4
Cc09_g01790 Coffea canephora HOM05D000062 ORTHO05D001642 8.0e-07 58.2 40 62.5
arahy.Tifrunner.gnm1.ann1.MP94HJ Arachis hypogaea HOM05D000062 ORTHO05D001642 1.0e-06 57.8 40 60.0
CARHR011970 Cardamine hirsuta HOM05D000062 ORTHO05D001642 1.0e-06 57.8 41 61.0
Lsat_1_v5_gn_4_59541 Lactuca sativa HOM05D000062 ORTHO05D001642 1.0e-06 57.8 40 60.0
Lsat_1_v5_gn_7_17780 Lactuca sativa HOM05D000062 ORTHO05D001642 1.0e-06 57.8 44 56.8
Lsat_1_v5_gn_7_17820 Lactuca sativa HOM05D000062 ORTHO05D001642 1.0e-06 57.8 44 56.8
Sp1g10270 Schrenkiella parvula HOM05D000062 ORTHO05D001642 1.0e-06 57.8 41 63.4
Sc17g0007280 Simmondsia chinensis HOM05D000062 ORTHO05D001642 1.0e-06 57.8 40 62.5
vmacro03690 Vaccinium macrocarpon HOM05D000062 ORTHO05D001642 1.0e-06 57.8 40 60.0
ECA234G4723 Erigeron canadensis HOM05D000062 ORTHO05D001642 1.4e-06 57.4 40 60.0
Carub.0001s1130 Capsella rubella HOM05D000062 ORTHO05D001642 1.8e-06 57.0 41 61.0
Thhalv10006883m.g Eutrema salsugineum HOM05D000062 ORTHO05D001642 1.8e-06 57.0 41 63.4
SGA_v2.0_scaffold7G03862 Striga asiatica HOM05D000062 ORTHO05D001642 1.8e-06 57.0 40 60.0
DCAR_008149 Daucus carota HOM05D000062 ORTHO05D001642 2.3e-06 56.6 40 57.5
ECA236G5123 Erigeron canadensis HOM05D000062 ORTHO05D001642 2.3e-06 56.6 40 57.5
Gohir.A10G013300 Gossypium hirsutum HOM05D000062 ORTHO05D001642 2.3e-06 56.6 40 60.0
Gohir.D10G013200 Gossypium hirsutum HOM05D000062 ORTHO05D001642 2.3e-06 56.6 40 60.0
Gorai.011G014900 Gossypium raimondii HOM05D000062 ORTHO05D001642 2.3e-06 56.6 40 60.0
CDE05G3206 Ceratophyllum demersum HOM05D000062 ORTHO05D001642 3.0e-06 56.2 40 62.5
HanXRQChr15g0471031 Helianthus annuus HOM05D000062 ORTHO05D001642 3.0e-06 56.2 40 60.0
arahy.Tifrunner.gnm1.ann1.5SQM65 Arachis hypogaea HOM05D000062 ORTHO05D001642 4.0e-06 55.8 40 57.5
BcaC05g25033 Brassica carinata HOM05D000062 ORTHO05D001642 4.0e-06 55.8 41 58.5
DCAR_008146 Daucus carota HOM05D000062 ORTHO05D001642 4.0e-06 55.8 40 55.0
Lsat_1_v5_gn_7_17720 Lactuca sativa HOM05D000062 ORTHO05D001642 4.0e-06 55.8 40 60.0
Lalb_Chr20g0113851 Lupinus albus HOM05D000062 ORTHO05D001642 5.2e-06 55.5 42 66.7
Psat2g094400 Pisum sativum HOM05D000062 ORTHO05D013119 5.2e-06 55.5 41 61.0
Psat5g180360 Pisum sativum HOM05D000062 ORTHO05D001642 5.2e-06 55.5 41 61.0
QL03p031068 Quercus lobata HOM05D000792 ORTHO05D000106 5.2e-06 55.5 100 41.0
AUR62012697 Chenopodium quinoa HOM05D000062 ORTHO05D001642 6.8e-06 55.1 40 55.0
MSTRG.7221 Avicennia marina HOM05D000062 ORTHO05D001642 8.8e-06 54.7 40 55.0
Psat7g138760 Pisum sativum HOM05D000062 ORTHO05D013119 8.8e-06 54.7 41 61.0


User provided reference genes

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