Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-256 889.0 449 100.0
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 2.2e-159 566.2 313 93.6
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.4e-142 509.6 481 59.7
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.1e-126 457.6 443 59.6
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-126 456.8 468 56.4
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 6.7e-124 448.4 484 54.3
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 7.4e-123 444.9 517 51.8
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 8.2e-122 441.4 478 53.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 9.0e-121 438.0 448 55.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 3.4e-120 436.0 479 54.7
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.3e-119 434.1 482 52.5
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.5e-119 431.8 466 53.2
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.4e-118 430.6 469 53.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.2e-118 429.5 478 53.1
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.1e-118 428.3 449 55.2
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.6e-117 427.2 456 55.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.3e-116 423.3 480 51.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.3e-116 423.3 480 52.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 6.7e-116 421.8 475 51.4
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 8.7e-116 421.4 449 52.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.5e-115 420.6 489 52.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.3e-113 412.1 476 51.5
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 4.5e-112 409.1 445 53.9
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 7.7e-112 408.3 437 53.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 7.7e-112 408.3 437 53.8
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.7e-112 408.3 490 49.8
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.3e-111 407.5 478 51.3
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.9e-111 406.4 450 54.0
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.9e-111 406.4 492 49.4
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.4e-110 404.1 486 51.2
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.5e-110 403.3 473 50.5
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 7.2e-110 401.7 489 48.5
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.4e-108 397.5 488 51.2
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.0e-108 396.4 430 53.5
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.5e-107 394.0 470 49.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.3e-107 392.9 482 49.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.2e-106 390.2 442 53.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-105 387.1 466 47.4
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.4e-105 386.7 488 50.8
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.4e-105 386.7 450 50.0
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.9e-105 385.2 462 48.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 9.1e-105 384.8 488 49.8
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.3e-103 380.9 411 54.5
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 8.5e-103 378.3 445 51.7
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.5e-102 376.7 441 49.0
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-102 376.7 405 54.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 4.2e-102 375.9 451 49.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 6.1e-101 372.1 466 48.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 2.3e-100 370.2 459 47.5
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.7e-95 354.0 455 44.6
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.9e-95 353.2 460 47.2
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 5.0e-95 352.4 501 45.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 7.2e-94 348.6 451 47.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 6.7e-92 342.0 443 49.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-87 327.4 403 48.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.9e-87 326.6 485 44.5
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-85 320.5 255 71.8
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.4e-75 286.6 445 42.9
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.4e-75 286.2 434 41.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.8e-74 282.7 399 46.4
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.1e-69 267.3 428 40.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 3.0e-68 263.5 430 38.4
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 2.0e-67 260.8 442 38.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 6.3e-66 255.8 432 38.7
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.1e-65 255.0 426 40.6
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.1e-65 253.1 427 41.7
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.9e-64 249.2 432 38.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-63 248.4 448 37.1
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 2.9e-63 246.9 427 40.0
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 8.6e-63 245.4 433 37.2
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.2e-61 241.5 416 36.5
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.2e-61 241.5 465 37.0
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.6e-61 241.1 430 37.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.1e-61 240.7 468 34.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.6e-61 240.0 417 37.2
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.3e-60 237.3 426 37.1
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 5.2e-60 236.1 418 36.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 5.2e-60 236.1 418 36.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-59 235.0 418 36.1
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.2e-59 235.0 418 36.1
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 2.0e-59 234.2 409 35.7
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.4e-59 233.4 327 45.6
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.7e-58 231.1 416 36.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.4e-57 228.0 439 35.1
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.2e-57 225.3 362 39.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.0e-55 220.3 177 63.8
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 5.0e-55 219.5 427 36.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-53 214.2 430 34.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.8e-52 211.1 431 35.0
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-52 211.1 441 34.2
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.4e-51 206.8 429 34.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.4e-51 206.5 369 35.0
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.3e-50 204.9 349 39.5
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.9e-50 203.8 402 36.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.1e-49 201.8 354 38.4
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.9e-49 201.1 390 37.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 6.0e-48 196.1 439 34.9
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.3e-47 194.9 375 36.5
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.6e-47 192.2 337 36.2
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.3e-46 189.1 330 37.0
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 4.7e-45 186.4 341 38.4
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.1e-44 185.3 413 32.4
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.2e-44 183.0 351 36.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.6e-43 180.6 125 70.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 5.8e-43 179.5 173 53.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-42 177.6 351 33.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.4e-41 172.9 215 49.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.6e-40 169.9 310 35.2
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 3.0e-39 167.2 355 32.1
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-38 165.2 425 29.2
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.3e-38 163.7 369 33.3
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.6e-37 160.2 360 32.5
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.0e-36 156.8 408 30.1
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.2e-36 156.4 361 31.9
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.2e-36 156.4 166 50.0
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.5e-35 154.8 358 31.3
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 4.4e-35 153.3 165 43.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.4e-33 148.3 112 64.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.5e-32 143.7 367 32.7
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.7e-31 141.4 282 36.9
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.7e-31 141.4 282 36.9
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.7e-31 141.4 361 30.7
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-30 137.9 342 30.1
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.8e-29 134.0 342 29.5
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.8e-29 134.0 154 51.3
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 8.1e-29 132.5 154 50.6
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.1e-28 132.1 355 34.4
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.2e-27 128.6 154 48.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-27 128.3 272 31.6
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-27 128.3 165 39.4
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.6e-27 127.5 152 49.3
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 2.9e-26 124.0 141 51.1
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.5e-24 117.1 400 28.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 6.6e-23 112.8 276 28.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 6.6e-23 112.8 150 38.7
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.6e-22 109.0 397 28.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.0e-19 101.3 74 62.2
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.0e-19 101.3 127 37.8
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.9e-19 99.0 132 47.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 3.8e-18 97.1 108 47.2
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.9e-18 96.7 117 43.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.2e-17 94.0 164 36.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 8.4e-10 69.3 103 34.0
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 1.2e-08 65.5 73 50.7
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.6e-08 65.1 63 47.6
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.6e-08 65.1 121 36.4


User provided reference genes

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