Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.0e-37 157.9 74 100.0
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.5e-28 128.3 76 80.3
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 9.6e-28 126.3 74 83.8
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.8e-26 122.1 61 88.5
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.4e-26 121.7 65 84.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 5.3e-26 120.6 67 82.1
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 9.0e-26 119.8 74 75.7
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 9.0e-26 119.8 71 77.5
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 5.8e-25 117.1 73 74.0
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 7.6e-25 116.7 71 76.1
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.3e-24 115.9 65 83.1
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.7e-24 115.5 68 73.5
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.7e-24 115.5 68 73.5
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.2e-24 115.2 71 73.2
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.2e-24 115.2 71 73.2
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.2e-24 115.2 71 78.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.9e-24 114.8 71 77.5
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 4.9e-24 114.0 73 71.2
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 6.4e-24 113.6 71 74.6
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 6.4e-24 113.6 71 76.1
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 8.4e-24 113.2 60 85.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 73 72.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 1.1e-23 112.8 69 76.8
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 2.4e-23 111.7 71 71.8
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.4e-23 111.7 59 84.7
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.4e-23 111.7 77 72.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.4e-23 111.7 77 72.7
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.4e-23 111.7 74 74.3
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.4e-23 111.7 59 84.7
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.2e-23 111.3 68 70.6
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 4.2e-23 110.9 71 70.4
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 4.2e-23 110.9 65 75.4
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 7.1e-23 110.2 66 75.8
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 7.1e-23 110.2 71 74.6
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 7.1e-23 110.2 71 74.6
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 7.1e-23 110.2 71 74.6
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 7.1e-23 110.2 70 74.3
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 9.3e-23 109.8 71 70.4
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.3e-23 109.8 71 70.4
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-22 109.4 59 83.1
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.6e-22 109.0 71 69.0
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.6e-22 109.0 59 81.4
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.1e-22 108.6 63 77.8
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.1e-22 108.6 68 69.1
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.7e-22 108.2 71 71.8
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 2.7e-22 108.2 63 79.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 3.5e-22 107.8 63 76.2
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 4.6e-22 107.5 72 70.8
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 4.6e-22 107.5 72 70.8
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 4.6e-22 107.5 73 68.5
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 6.0e-22 107.1 72 70.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 6.0e-22 107.1 72 70.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 6.0e-22 107.1 72 70.8
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 70.4
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 7.8e-22 106.7 68 72.1
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 7.8e-22 106.7 66 69.7
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.0e-21 106.3 59 81.4
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.7e-21 105.5 73 67.1
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.3e-21 105.1 71 67.6
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.3e-21 105.1 68 69.1
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.0e-21 104.8 55 85.5
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.0e-21 104.8 71 70.4
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 3.9e-21 104.4 71 70.4
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 3.9e-21 104.4 80 66.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.9e-21 104.4 71 69.0
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.9e-21 104.4 56 80.4
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 5.1e-21 104.0 71 67.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 5.1e-21 104.0 71 70.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 6.6e-21 103.6 57 80.7
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 8.7e-21 103.2 66 71.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.1e-20 102.8 71 69.0
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-20 102.8 55 83.6
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.5e-20 102.4 57 77.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.5e-20 102.4 57 80.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.9e-20 102.1 71 67.6
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.9e-20 102.1 69 69.6
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.5e-20 101.7 72 68.1
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 2.5e-20 101.7 57 82.5
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 71 67.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.5e-20 101.7 71 67.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 3.3e-20 101.3 59 78.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 3.3e-20 101.3 58 77.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 3.3e-20 101.3 63 73.0
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.3e-20 100.9 71 66.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.3e-20 100.9 57 82.5
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 5.6e-20 100.5 56 83.9
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 5.6e-20 100.5 50 88.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 5.6e-20 100.5 71 64.8
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 7.3e-20 100.1 71 66.2
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 9.6e-20 99.8 56 82.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.6e-19 99.0 71 64.8
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.1e-19 98.6 60 76.7
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 2.1e-19 98.6 62 69.4
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 2.8e-19 98.2 56 75.0
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.8e-19 97.4 51 84.3
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 6.2e-19 97.1 62 74.2
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 8.1e-19 96.7 56 76.8
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 4.0e-18 94.4 71 62.0
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 4.0e-18 94.4 57 73.7
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 6.9e-18 93.6 52 78.8
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 56 75.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.9e-17 89.7 57 70.2
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.3e-16 89.4 44 90.9
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.8e-16 87.8 65 64.6
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 6.4e-16 87.0 63 66.7
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.2e-15 84.3 65 63.1
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.6e-14 82.4 45 80.0
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.9e-14 80.1 65 56.9
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.0e-13 79.7 50 70.0
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 3.9e-13 77.8 47 70.2
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.1e-12 76.3 51 60.8
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.9e-12 75.5 54 59.3
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.9e-12 75.5 64 54.7
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 4.3e-12 74.3 50 60.0
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.3e-11 72.8 57 56.1
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.8e-10 68.9 47 61.7
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 6.9e-10 67.0 35 80.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.3e-08 62.8 59 50.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.3e-08 62.8 59 50.8
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.7e-08 62.4 57 54.4
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 8.4e-08 60.1 39 66.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 8.4e-08 60.1 28 85.7
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 3.5e-06 54.7 39 59.0
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 7.9e-06 53.5 50 52.0


User provided reference genes

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