Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 2185.6 1088 100.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1883.6 1086 85.4
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1875.1 1088 85.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1825.4 1087 82.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1818.9 1087 82.3
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1818.5 1085 82.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1776.5 1083 80.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1774.2 1082 79.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1773.8 1087 80.5
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1773.1 1087 80.5
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1769.2 1089 79.9
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1763.8 1164 76.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1763.4 1087 79.7
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1763.0 1083 80.5
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1755.7 1164 76.2
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1753.4 1085 79.4
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1750.3 1085 79.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1748.0 1085 78.5
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1746.9 1088 79.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1741.9 1085 79.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1739.9 1087 79.4
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1733.4 1070 79.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1088 79.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1729.1 1085 77.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1728.4 1083 78.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1726.1 1085 77.9
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1724.1 1083 77.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1723.0 1086 77.7
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1722.6 1085 78.3
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1722.2 1092 78.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1722.2 1084 77.9
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1083 77.7
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1715.7 1085 77.4
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1713.4 1085 77.7
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1711.0 1084 78.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1707.6 1087 77.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1707.6 1097 76.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1087 77.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1704.1 1083 76.5
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1703.0 1083 76.8
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1702.6 1083 76.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1694.9 1083 76.4
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1694.5 1084 75.9
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1692.2 1083 76.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1691.8 1085 76.8
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1689.9 1085 77.1
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1110 75.0
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1688.7 1085 76.8
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1688.3 1085 76.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1687.5 1085 77.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1085 76.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1675.6 1082 75.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1675.6 1082 75.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1087 75.8
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1087 75.5
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1090 74.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1096 73.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1639.8 1087 74.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1635.9 1087 73.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1083 73.9
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1625.9 1093 73.7
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1087 73.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1087 73.6
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1624.4 1087 73.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1088 73.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1616.3 1085 75.0
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1084 73.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1613.2 1085 72.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1082 73.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1082 73.6
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1080 76.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1612.0 1112 72.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1092 72.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1606.7 1085 72.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1082 73.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1604.3 1022 77.9
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1085 73.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1068 74.2
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1082 73.0
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1082 73.8
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1082 73.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 992 80.3
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1086 72.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1082 73.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1085 73.3
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1089 72.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1082 73.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1082 73.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1597.8 1085 73.0
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1083 71.6
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1594.7 1082 73.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1589.7 1093 71.9
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1088 72.2
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1104 72.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1087 71.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1156 67.6
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1086 71.7
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1097 70.6
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1083 71.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1084 72.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1110 70.5
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1573.1 1108 70.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 999 76.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1058 72.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1081 69.9
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1499.2 1112 67.4
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1497.6 1085 67.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1484.9 982 73.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1463.0 1083 68.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1434.5 1107 63.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1379.0 1084 66.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1269.6 791 79.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1189.1 690 83.9
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1184.5 1087 54.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1177.9 1088 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1172.5 1089 53.9
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1164.1 1129 52.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1152.1 1090 52.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 760 75.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 717 78.9
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1139.0 672 82.1
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.8e-301 1038.9 844 61.1
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.6e-280 968.8 814 60.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.7e-278 961.4 610 78.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.5e-257 891.7 962 49.3
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.7e-251 871.3 627 71.0
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 9.8e-238 827.8 634 64.8
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.1e-236 824.3 500 80.6
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.0e-218 764.6 973 46.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.1e-179 634.0 617 53.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-166 591.7 427 69.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.2e-148 530.4 300 84.0
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.8e-138 496.1 387 67.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.7e-128 463.8 313 73.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.4e-89 334.0 302 60.6
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.8e-88 330.9 239 69.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.9e-64 250.8 205 62.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 9.3e-63 246.5 136 82.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.9e-48 198.4 138 63.0
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 6.7e-37 160.6 105 72.4
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 9.7e-36 156.8 141 60.3
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.2e-35 155.6 157 55.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 7.2e-31 140.6 156 50.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 5.2e-29 134.4 72 86.1
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 6.8e-29 134.0 88 72.7
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.5e-23 115.5 97 60.8
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 6.3e-19 100.9 147 42.9
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.4e-13 83.2 47 80.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.8e-13 82.8 49 73.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 6.3e-11 74.3 76 44.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 111 41.4
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.9e-07 62.8 38 76.3
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 2.8e-06 58.9 69 50.7


User provided reference genes

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