Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 0.0e+00 1324.7 723 100.0
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 0.0e+00 1134.4 723 86.3
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 0.0e+00 1094.3 810 76.7
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 0.0e+00 1079.7 723 82.6
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 3.6e-305 1051.2 724 79.6
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.7e-302 1042.3 724 79.3
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 8.4e-294 1013.4 723 77.3
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 2.7e-292 1008.4 730 77.3
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 1.9e-290 1002.3 724 77.6
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 6.2e-289 997.3 723 76.1
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 5.8e-287 990.7 695 78.4
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 4.6e-284 981.1 724 75.7
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 4.3e-282 974.5 724 74.4
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.1e-281 972.2 723 73.2
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 2.8e-281 971.8 724 75.8
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 4.8e-281 971.1 730 74.9
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.8e-280 969.1 726 75.2
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 9.9e-279 963.4 725 74.1
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.2e-278 962.2 730 74.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 9.3e-277 956.8 693 75.2
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 7.4e-274 947.2 727 74.3
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.3e-273 946.4 726 73.1
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.4e-272 943.0 723 72.5
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 4.0e-272 941.4 727 71.8
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 1.0e-270 936.8 727 71.4
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 6.5e-270 934.1 671 78.4
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.1e-269 933.3 753 69.7
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 6.0e-268 927.5 723 71.1
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 7.9e-268 927.2 730 71.5
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.0e-267 925.2 727 71.4
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 3.0e-267 925.2 725 73.1
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 5.1e-267 924.5 724 72.4
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 8.7e-267 923.7 727 71.1
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.8e-265 918.7 724 70.7
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.1e-264 915.2 729 70.5
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 4.1e-264 914.8 745 69.7
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 5.3e-264 914.4 727 70.3
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 3.4e-263 911.8 726 70.9
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.0e-262 910.2 723 71.0
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 2.2e-262 909.1 705 72.1
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 5.5e-261 904.4 724 69.8
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 3.6e-260 901.7 727 69.9
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 8.7e-259 897.1 723 69.6
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.6e-257 892.9 724 69.1
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 2.2e-257 892.5 723 67.1
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.2e-257 892.5 725 68.7
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 2.2e-257 892.5 729 68.2
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.4e-256 889.8 725 69.1
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 3.1e-256 888.6 726 69.6
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 3.4e-255 885.2 723 66.9
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 2.2e-254 882.5 723 67.5
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 1.4e-253 879.8 722 66.9
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 1.9e-253 879.4 731 67.6
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.5e-253 879.0 799 66.2
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.2e-252 876.7 725 66.5
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.0e-251 873.6 731 67.0
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.1e-251 871.3 724 68.2
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 8.8e-251 870.5 724 67.1
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 3.7e-249 865.1 725 65.9
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 8.2e-249 864.0 700 70.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 4.1e-248 861.7 724 65.7
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 1.0e-246 857.1 714 67.5
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 2.2e-246 855.9 724 66.2
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 6.5e-246 854.4 813 62.2
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 3.2e-245 852.0 696 69.8
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 2.6e-242 842.4 699 67.8
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 3.3e-242 842.0 724 67.5
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.4e-242 841.6 729 66.8
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 7.4e-242 840.9 722 65.1
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 6.3e-241 837.8 727 65.7
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 2.4e-240 835.9 733 64.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 5.3e-240 834.7 731 68.3
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 9.1e-240 833.9 724 65.1
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 9.1e-240 833.9 724 65.1
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 7.7e-239 830.9 737 63.6
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.2e-236 823.5 662 71.9
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 1.1e-232 810.4 724 65.9
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 9.8e-226 787.3 697 63.8
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.1e-224 783.9 725 64.7
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 1.4e-224 783.5 723 61.8
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 7.0e-224 781.2 745 61.3
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 3.7e-217 758.8 725 61.1
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 4.5e-215 751.9 699 62.8
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 4.5e-215 751.9 672 62.9
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.6e-207 726.9 775 55.7
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 5.0e-206 721.8 725 59.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.7e-198 696.8 731 56.6
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 7.3e-197 691.4 594 67.0
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 4.7e-196 688.7 673 60.0
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.4e-187 660.6 730 54.4
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 3.1e-171 606.3 725 50.3
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.0e-166 591.3 554 64.3
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 6.2e-164 582.0 576 59.5
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 3.4e-154 549.7 425 72.9
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.9e-149 533.9 585 55.6
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 8.2e-148 528.5 358 79.9
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.3e-141 506.5 427 70.7
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 4.3e-141 506.1 362 75.7
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.1e-131 473.4 299 81.9
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 2.2e-116 424.1 270 81.9
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 2.0e-114 417.5 373 63.5
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 2.9e-97 360.5 692 36.4
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 2.0e-93 347.8 444 51.1
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 5.8e-93 346.3 503 49.5
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 5.0e-89 333.2 372 56.7
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.3e-86 324.3 343 58.6
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 4.9e-84 316.6 668 33.1
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 7.0e-83 312.8 272 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 3.0e-81 307.4 730 33.3
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 4.3e-80 303.5 656 38.1
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.5e-69 268.5 707 30.1
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.2e-67 260.8 764 29.2
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.6e-42 178.7 136 71.3
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 9.6e-40 169.5 105 85.7
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.7e-26 124.8 83 71.1
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.4e-25 122.5 121 60.3
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 3.0e-25 121.3 190 46.8
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.8e-23 114.0 110 55.5
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 8.2e-23 113.2 503 24.9
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.5e-21 107.5 124 49.2
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.5e-20 103.2 154 42.9
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.4e-19 102.4 94 59.6
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 2.7e-18 98.2 105 55.2
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 6.1e-18 97.1 70 71.4
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 1.1e-16 92.8 98 52.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.5e-16 92.4 55 87.3
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 5.7e-16 90.5 157 36.9
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 1.2e-13 82.8 115 40.0
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.0e-13 82.0 68 61.8
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 3.2e-11 74.7 55 67.3
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 6.7e-09 67.0 41 78.0
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.4e-06 58.5 41 70.7
SEGI_32656 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.4e-06 58.5 121 33.9


User provided reference genes

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