Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 1.2e-42 176.0 85 100.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 2.7e-42 174.9 85 98.8
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 3.1e-38 161.4 85 89.4
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-37 159.5 85 88.2
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 3.4e-37 157.9 85 88.2
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.7e-34 148.3 87 81.6
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 3.5e-34 147.9 87 81.6
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.5e-34 147.9 75 89.3
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 1.0e-33 146.4 80 82.5
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.3e-33 146.0 78 85.9
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.8e-33 145.6 81 81.5
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 3.0e-33 144.8 78 83.3
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 3.9e-33 144.4 89 76.4
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.1e-33 144.1 80 83.8
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.1e-33 144.1 81 81.5
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.1e-33 144.1 81 81.5
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 6.7e-33 143.7 75 88.0
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 6.7e-33 143.7 75 88.0
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.7e-33 143.7 81 80.2
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.7e-33 143.7 81 81.5
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 6.7e-33 143.7 88 77.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 8.7e-33 143.3 78 82.1
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 8.7e-33 143.3 88 76.1
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 8.7e-33 143.3 81 81.5
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 82.1
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.1e-32 142.9 78 82.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 83.1
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.1e-32 142.9 85 74.1
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.5e-32 142.5 81 80.2
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.9e-32 142.1 84 76.2
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.5e-32 141.7 78 83.3
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.5e-32 141.7 88 75.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 3.3e-32 141.4 81 80.2
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 4.3e-32 141.0 75 82.7
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 4.3e-32 141.0 86 75.6
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 5.6e-32 140.6 78 79.5
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 5.6e-32 140.6 79 81.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 5.6e-32 140.6 83 75.9
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 5.6e-32 140.6 78 80.8
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 7.4e-32 140.2 79 81.0
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 7.4e-32 140.2 78 79.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 9.6e-32 139.8 79 81.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 9.6e-32 139.8 78 82.1
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.3e-31 139.4 80 78.8
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.3e-31 139.4 78 78.2
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.3e-31 139.4 77 81.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 78 79.5
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.6e-31 139.0 75 82.7
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.6e-31 139.0 75 82.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 1.6e-31 139.0 80 78.8
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 78 79.5
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.6e-31 139.0 78 79.5
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 78 79.5
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.6e-31 139.0 78 79.5
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.6e-31 139.0 81 77.8
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 2.1e-31 138.7 81 77.8
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.1e-31 138.7 78 80.8
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.1e-31 138.7 78 80.8
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.8e-31 138.3 81 77.8
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.8e-31 138.3 77 80.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.8e-31 138.3 78 78.2
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 2.8e-31 138.3 78 79.5
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 3.7e-31 137.9 78 79.5
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 3.7e-31 137.9 79 78.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 6.2e-31 137.1 79 78.5
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 6.2e-31 137.1 75 81.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 6.2e-31 137.1 75 82.7
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 6.2e-31 137.1 78 82.1
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 8.1e-31 136.7 77 79.2
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 8.1e-31 136.7 78 79.5
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 8.1e-31 136.7 80 76.2
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.1e-30 136.3 79 75.9
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.1e-30 136.3 78 78.2
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.1e-30 136.3 79 77.2
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.4e-30 135.2 80 76.2
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 3.1e-30 134.8 80 77.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 3.1e-30 134.8 81 75.3
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 5.3e-30 134.0 79 74.7
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 5.3e-30 134.0 79 74.7
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 5.3e-30 134.0 79 74.7
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 6.9e-30 133.7 80 75.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 9.0e-30 133.3 79 74.7
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.0e-30 133.3 81 77.8
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.0e-30 133.3 81 77.8
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-29 132.9 79 75.9
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.2e-29 132.9 79 75.9
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.2e-29 132.9 82 76.8
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.5e-29 132.5 79 75.9
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 2.6e-29 131.7 80 73.8
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.6e-29 131.7 79 74.7
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.6e-29 131.7 79 74.7
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.6e-29 131.7 79 74.7
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 4.5e-29 131.0 80 73.8
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.7e-28 129.0 92 67.4
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 2.2e-28 128.6 71 87.3
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 2.9e-28 128.3 81 70.4
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.4e-27 125.9 94 64.9
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.9e-27 125.6 74 82.4
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.2e-27 124.8 71 84.5
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.3e-27 123.2 81 72.8
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 7.9e-26 120.2 67 83.6
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 7.9e-26 120.2 113 54.0
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.0e-25 119.8 64 85.9
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-25 119.0 70 78.6
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.9e-25 117.9 61 82.0
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.1e-24 116.3 76 75.0
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.4e-24 113.6 72 77.8
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.6e-24 113.2 72 76.4
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 1.3e-23 112.8 69 72.5
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-23 112.5 70 81.4
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.8e-23 111.7 74 67.6
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 3.7e-23 111.3 70 81.4
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 6.2e-23 110.5 67 76.1
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 8.2e-23 110.2 50 90.0
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.1e-22 109.8 69 73.9
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 1.4e-22 109.4 72 69.4
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 1.4e-22 109.4 69 76.8
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-22 109.4 64 79.7
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 3.1e-22 108.2 68 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.2e-20 102.1 77 58.4
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 6.5e-20 100.5 66 68.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.2e-18 96.3 50 78.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 7.9e-18 93.6 48 79.2
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 7.9e-18 93.6 48 79.2
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 7.9e-18 93.6 48 79.2
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.0e-17 93.2 61 68.9
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.0e-17 93.2 61 68.9
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.3e-15 86.3 49 71.4
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 4.8e-15 84.3 49 79.6
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.4e-11 72.8 55 63.6
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 4.2e-11 71.2 36 77.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.6e-10 69.3 38 73.7
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.4e-09 66.2 71 50.7
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 2.3e-09 65.5 71 40.8
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.5e-08 62.8 47 57.4
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.9e-08 62.4 39 82.1
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 4.1e-06 54.7 37 62.2


User provided reference genes

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