Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.4e-34 147.9 106 100.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.7e-20 101.3 106 53.8
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 8.1e-20 100.5 106 55.7
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.8e-19 99.4 106 55.7
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 54.7
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.2e-18 96.7 106 51.9
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.2e-18 96.7 98 58.2
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.5e-18 96.3 106 53.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.4e-18 94.7 106 52.8
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 9.8e-18 93.6 93 67.7
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.7e-17 92.8 98 56.1
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.7e-17 92.8 98 50.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.9e-17 92.0 98 57.1
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.9e-17 92.0 106 50.9
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.7e-17 91.7 106 62.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 3.7e-17 91.7 98 55.1
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 4.9e-17 91.3 98 52.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 6.4e-17 90.9 106 49.1
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.1e-16 90.1 98 58.2
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.1e-16 90.1 97 63.9
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-16 89.4 106 50.9
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.9e-16 89.4 106 50.9
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.9e-16 89.4 80 60.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.4e-16 89.0 106 51.9
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 4.1e-16 88.2 106 51.9
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.4e-16 87.8 98 50.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 5.4e-16 87.8 106 50.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 7.1e-16 87.4 106 49.1
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 7.1e-16 87.4 106 50.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 7.1e-16 87.4 106 50.9
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.2e-16 87.0 106 50.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 9.2e-16 87.0 98 53.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-15 86.7 104 54.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.6e-15 86.3 106 50.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.6e-15 86.3 103 49.5
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.7e-15 85.5 97 53.6
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 3.5e-15 85.1 106 49.1
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 3.5e-15 85.1 106 49.1
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.6e-15 84.7 99 50.5
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 4.6e-15 84.7 106 47.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.6e-15 84.7 91 50.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 6.0e-15 84.3 106 49.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 7.8e-15 84.0 106 61.3
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.0e-14 83.6 101 47.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.0e-14 83.6 101 52.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.0e-14 83.6 101 48.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.3e-14 83.2 106 49.1
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.7e-14 82.8 105 50.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.7e-14 82.8 98 51.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.7e-14 82.8 92 53.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.7e-14 82.8 106 52.8
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 2.3e-14 82.4 108 61.1
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.0e-14 82.0 103 48.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.0e-14 82.0 106 48.1
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.1e-14 81.3 106 47.2
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 8.6e-14 80.5 98 45.9
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 8.6e-14 80.5 98 45.9
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.6e-14 80.5 106 47.2
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.1e-13 80.1 106 46.2
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.1e-13 80.1 101 45.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.5e-13 79.7 102 46.1
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-13 79.3 95 49.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.9e-13 79.3 84 53.6
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.5e-13 79.0 106 50.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 4.3e-13 78.2 78 56.4
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.6e-13 77.8 107 46.7
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.5e-13 77.0 103 46.6
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 9.5e-13 77.0 97 51.5
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.2e-12 76.6 104 50.0
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.2e-12 76.6 101 45.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.6e-12 76.3 116 44.8
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.6e-12 76.3 94 44.7
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.6e-12 76.3 98 66.3
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.1e-12 75.9 97 48.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.1e-12 75.9 103 46.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.1e-12 75.9 94 46.8
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 2.1e-12 75.9 98 45.9
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.1e-12 75.9 98 46.9
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.8e-12 75.5 106 47.2
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.8e-12 75.5 107 44.9
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 2.8e-12 75.5 107 65.4
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.6e-12 75.1 94 50.0
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 4.7e-12 74.7 97 49.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.7e-12 74.7 103 46.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 6.2e-12 74.3 107 46.7
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.2e-12 74.3 104 47.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.4e-11 73.2 98 45.9
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.4e-11 73.2 80 52.5
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.4e-11 73.2 71 69.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-11 73.2 97 48.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.8e-11 72.8 103 48.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.3e-11 72.4 104 46.2
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 3.1e-11 72.0 106 58.5
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 3.1e-11 72.0 102 46.1
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.0e-11 71.6 93 47.3
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.8e-11 70.9 71 74.6
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 6.8e-11 70.9 106 59.4
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 6.8e-11 70.9 97 46.4
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 8.9e-11 70.5 75 54.7
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.9e-11 70.5 106 62.3
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.9e-11 70.5 106 61.3
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.9e-11 70.5 106 61.3
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 8.9e-11 70.5 106 41.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.2e-10 70.1 106 42.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-10 70.1 92 48.9
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-10 69.7 96 60.4
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.0e-10 69.3 106 50.9
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.0e-10 69.3 102 53.9
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.0e-10 69.3 79 74.7
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.6e-10 68.9 92 63.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 3.4e-10 68.6 82 48.8
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.4e-10 68.6 101 47.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.4e-10 68.6 94 47.9
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.4e-10 68.6 96 47.9
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 5.8e-10 67.8 35 94.3
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.8e-10 67.8 81 49.4
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 5.8e-10 67.8 92 47.8
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 9.9e-10 67.0 107 60.7
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 9.9e-10 67.0 92 41.3
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.7e-09 66.2 92 40.2
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.7e-09 66.2 35 91.4
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 2.2e-09 65.9 98 56.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.9e-09 65.5 73 52.1
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.8e-09 65.1 99 45.5
Nitab4.5_0000787g0030 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.9e-09 64.7 82 76.8
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 4.9e-09 64.7 35 85.7
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 4.9e-09 64.7 35 85.7
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 4.9e-09 64.7 103 43.7
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.9e-09 64.7 90 45.6
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 6.4e-09 64.3 100 45.0
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 8.4e-09 63.9 101 58.4
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 8.4e-09 63.9 81 44.4
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 8.4e-09 63.9 99 44.4
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.4e-09 63.9 35 85.7
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.4e-08 63.2 98 43.9
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.9e-08 62.8 34 85.3
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.9e-08 62.8 81 46.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.4e-08 62.4 35 85.7
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.4e-08 62.4 35 82.9
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 4.1e-08 61.6 93 43.0
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 5.4e-08 61.2 106 65.1
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 5.4e-08 61.2 35 82.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 5.4e-08 61.2 35 80.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.2e-07 60.1 110 40.0
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 1.2e-07 60.1 105 55.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.6e-07 59.7 106 41.5
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.1e-07 59.3 85 43.5
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 2.1e-07 59.3 106 66.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.7e-07 58.9 96 38.5
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.5e-07 58.5 96 44.8
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 4.6e-07 58.2 35 77.1
PGSC0003DMG400024883 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.6e-07 58.2 109 55.0
PGR142G0105 Punica granatum HOM05D004289 ORTHO05D005141 1.3e-06 56.6 109 61.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.3e-06 55.8 96 39.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.1e-06 54.7 35 68.6


User provided reference genes

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