Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.8e-113 412.9 264 100.0
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 5.4e-49 198.7 262 54.2
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 1.2e-48 197.6 273 49.8
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 2.1e-48 196.8 274 52.6
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.3e-47 194.1 267 50.2
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 6.6e-47 191.8 270 49.6
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 8.6e-47 191.4 262 50.0
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 8.6e-47 191.4 262 50.0
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 4.3e-46 189.1 269 49.8
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 7.3e-46 188.3 272 47.4
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 9.6e-46 188.0 273 47.6
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.6e-45 187.2 253 51.8
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 2.0e-43 180.3 252 51.2
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 5.8e-43 178.7 270 47.8
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.2e-42 176.8 270 46.3
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 3.8e-42 176.0 265 47.2
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.8e-42 176.0 265 47.2
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 3.8e-42 176.0 283 44.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.1e-41 174.5 270 47.8
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 1.1e-41 174.5 285 46.7
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 2.4e-41 173.3 262 47.7
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 5.4e-41 172.2 274 48.2
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 9.3e-41 171.4 277 45.1
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 1.2e-40 171.0 273 48.0
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 2.1e-40 170.2 271 45.4
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 4.6e-40 169.1 266 46.2
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 7.8e-40 168.3 271 45.4
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.7e-39 167.2 266 46.2
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 2.3e-39 166.8 260 44.6
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 3.9e-39 166.0 255 44.7
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 5.1e-39 165.6 254 48.4
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 1.1e-38 164.5 260 44.2
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 2.5e-38 163.3 275 46.2
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 2.1e-37 160.2 248 48.0
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 6.2e-37 158.7 276 43.1
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 8.1e-37 158.3 259 46.3
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 2.4e-36 156.8 281 44.8
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 2.4e-36 156.8 256 47.7
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 3.1e-36 156.4 270 52.2
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 4.0e-36 156.0 269 44.6
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 4.0e-36 156.0 258 47.3
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 9.0e-36 154.8 271 45.8
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 9.0e-36 154.8 268 45.1
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 2.0e-35 153.7 251 46.6
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 3.4e-35 152.9 268 47.8
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 2.9e-34 149.8 293 44.0
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.1e-33 147.9 235 45.5
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.1e-33 147.9 251 44.6
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 3.2e-33 146.4 222 48.6
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 5.4e-33 145.6 235 45.1
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 9.3e-33 144.8 262 43.9
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.7e-32 143.3 233 45.5
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 2.7e-32 143.3 262 39.7
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 6.0e-32 142.1 278 44.2
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 5.1e-31 139.0 278 42.1
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 7.4e-30 135.2 274 42.3
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 3.1e-28 129.8 271 39.1
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 6.9e-28 128.6 253 41.1
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 6.9e-28 128.6 268 39.2
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 1.2e-27 127.9 264 42.0
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.2e-27 127.9 254 47.2
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 3.4e-27 126.3 264 42.8
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 3.4e-27 126.3 267 42.3
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 1.3e-26 124.4 145 55.9
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 2.9e-26 123.2 250 43.6
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 6.4e-26 122.1 253 41.1
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 8.4e-26 121.7 171 49.1
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 3.2e-25 119.8 253 45.1
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 3.2e-25 119.8 279 36.9
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 3.5e-24 116.3 254 37.8
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 2.3e-23 113.6 229 40.2
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 3.0e-23 113.2 258 39.1
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 3.9e-23 112.8 275 35.3
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 5.1e-23 112.5 275 35.3
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 6.7e-23 112.1 55 98.2
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 2.8e-21 106.7 267 47.9
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.5e-19 100.9 269 33.8
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 4.5e-19 99.4 368 32.6
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 1.3e-18 97.8 134 50.7
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 1.7e-18 97.4 263 33.8
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 8.4e-18 95.1 262 35.9
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 8.4e-18 95.1 258 34.5
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 7.1e-17 92.0 133 52.6
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 2.1e-16 90.5 110 54.5
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 2.7e-16 90.1 229 37.6
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 2.1e-13 80.5 270 31.9
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 4.8e-13 79.3 260 32.3
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 6.3e-13 79.0 90 60.0
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 1.8e-12 77.4 268 32.5
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 3.1e-12 76.6 256 32.0
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.2e-11 74.7 101 52.5
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 2.0e-11 73.9 272 38.6
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 3.4e-11 73.2 218 35.8
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 4.5e-11 72.8 121 48.8
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 4.5e-11 72.8 121 48.8
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 5.9e-11 72.4 263 34.6
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 5.0e-10 69.3 133 39.1
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 1.2e-08 64.7 33 93.9
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.6e-08 64.3 262 31.3
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 2.7e-08 63.5 232 30.6
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 3.6e-08 63.2 99 46.5
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 3.6e-08 63.2 99 46.5
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 4.6e-08 62.8 232 28.0
Oeu005316.1 Olea europaea HOM05D002661 ORTHO05D002786 1.8e-07 60.8 237 26.2
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 3.0e-07 60.1 234 28.2
Nitab4.5_0000337g0140 Nicotiana tabacum HOM05D002661 ORTHO05D002786 3.9e-07 59.7 245 26.9
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 5.1e-07 59.3 215 30.7
Psat2g154760 Pisum sativum HOM05D002661 ORTHO05D002786 5.1e-07 59.3 240 25.4
Dinv40084 Davidia involucrata HOM05D002661 ORTHO05D002786 6.7e-07 58.9 235 25.5
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 1.5e-06 57.8 240 27.5
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 1.5e-06 57.8 231 26.8
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 3.3e-06 56.6 235 24.3
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 5.7e-06 55.8 241 26.1
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 5.7e-06 55.8 232 28.9
Potri.002G023000 Populus trichocarpa HOM05D002661 ORTHO05D002786 5.7e-06 55.8 231 27.7
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 7.4e-06 55.5 240 27.1
MD15G1245800 Malus domestica HOM05D002661 ORTHO05D002786 9.7e-06 55.1 235 25.5
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 9.7e-06 55.1 234 26.1


User provided reference genes

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