Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.5e-193 679.5 375 100.0
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 2.5e-177 625.5 374 92.2
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-175 620.2 375 89.3
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 5.3e-175 617.8 384 87.0
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 5.3e-175 617.8 374 90.6
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.0e-174 615.9 374 90.9
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 2.6e-174 615.5 376 88.6
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 2.6e-174 615.5 374 88.5
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.3e-173 613.2 375 89.1
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 2.9e-173 612.1 374 87.7
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 6.5e-173 610.9 384 88.3
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.2e-172 608.2 374 87.2
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 6.1e-171 604.4 384 85.7
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.0e-170 603.6 374 86.1
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.0e-170 602.1 374 89.0
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 5.1e-170 601.3 374 84.0
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 5.1e-170 601.3 374 85.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 6.7e-170 600.9 366 88.5
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 8.8e-170 600.5 374 86.4
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.5e-169 599.7 376 86.4
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.5e-169 599.7 385 84.4
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 2.0e-169 599.4 376 86.2
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 9.7e-169 597.0 374 88.5
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.7e-168 596.3 370 85.9
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.8e-168 595.5 374 88.8
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 3.7e-168 595.1 385 82.3
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 3.7e-168 595.1 384 83.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.3e-168 594.3 373 88.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 6.3e-168 594.3 375 84.5
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 8.2e-168 594.0 374 88.5
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 7.0e-167 590.9 376 88.3
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 7.0e-167 590.9 386 85.8
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.0e-166 589.3 370 84.9
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.7e-165 586.3 374 86.9
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 3.8e-165 585.1 384 82.3
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.8e-165 585.1 384 81.0
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 2.5e-164 582.4 364 88.5
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.5e-164 582.4 367 86.6
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.2e-163 580.1 370 84.3
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.7e-163 578.9 385 84.4
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.4e-162 576.6 384 81.5
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.8e-162 576.2 385 84.2
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.6e-161 572.4 384 83.3
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 6.3e-160 567.8 385 82.6
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.1e-159 567.0 374 85.3
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.2e-158 563.5 364 83.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 2.6e-158 562.4 366 85.0
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.7e-157 559.7 380 80.0
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.5e-156 556.6 354 83.1
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.9e-156 556.2 374 82.4
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.5e-156 555.8 374 83.2
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 5.5e-156 554.7 387 80.4
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.2e-155 553.5 387 77.8
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.2e-155 553.5 366 84.4
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 3.6e-155 552.0 385 81.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 4.7e-155 551.6 350 83.7
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 3.0e-154 548.9 372 80.4
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.7e-154 547.7 374 82.6
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 8.8e-154 547.4 365 84.1
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.4e-153 545.0 374 78.9
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 4.4e-153 545.0 386 80.1
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 4.4e-153 545.0 386 80.1
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 7.5e-153 544.3 363 84.0
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 9.7e-153 543.9 387 79.6
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.3e-152 543.5 363 84.0
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.4e-151 539.3 371 80.3
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.1e-151 538.9 398 79.4
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 4.1e-151 538.5 374 78.6
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 5.3e-151 538.1 358 82.7
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 9.1e-151 537.3 385 79.2
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.7e-150 535.8 371 80.3
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 5.9e-150 534.6 384 77.9
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 5.9e-150 534.6 351 84.9
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.2e-149 532.7 367 80.1
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 8.5e-149 530.8 354 83.1
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.1e-148 530.4 382 80.9
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-148 530.4 350 85.1
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 3.2e-148 528.9 369 81.3
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 9.4e-148 527.3 385 77.7
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-147 526.9 342 85.7
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.6e-147 526.6 386 78.8
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.1e-147 526.2 342 85.7
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 6.1e-147 524.6 344 81.4
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.0e-146 521.9 410 73.2
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.5e-145 520.0 367 78.5
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.3e-144 516.9 373 77.5
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 3.7e-144 515.4 369 75.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 3.7e-144 515.4 367 79.0
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.1e-143 513.8 361 81.7
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.4e-143 513.5 360 81.4
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.8e-143 513.1 350 81.7
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.1e-143 512.3 369 74.8
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.5e-142 508.8 362 79.0
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 5.0e-141 505.0 355 78.9
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 8.6e-141 504.2 317 89.3
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.2e-139 500.4 368 76.1
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.8e-138 496.5 346 77.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.8e-138 496.5 374 75.7
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 8.9e-138 494.2 384 71.6
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.5e-137 493.4 364 76.4
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 5.7e-137 491.5 352 77.3
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.5e-137 491.1 368 73.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-136 490.3 367 76.3
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.7e-136 490.0 360 76.9
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.2e-136 489.6 360 75.3
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 2.2e-136 489.6 352 79.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 3.7e-136 488.8 346 78.6
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 6.3e-136 488.0 346 79.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 6.3e-136 488.0 346 79.2
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 8.3e-136 487.6 355 76.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.1e-135 487.3 371 76.3
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.2e-134 483.8 369 75.1
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.3e-133 479.6 343 79.0
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.4e-127 459.5 318 80.5
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.2e-126 457.2 369 66.4
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.3e-125 453.0 354 73.7
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.6e-124 448.4 353 68.3
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-122 443.7 379 70.2
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 4.0e-122 442.2 293 83.3
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.2e-119 432.6 365 62.7
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 9.2e-119 431.0 292 85.6
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.3e-116 422.2 386 66.3
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.8e-115 419.5 361 61.2
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.7e-115 418.7 267 82.8
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.7e-112 410.2 286 77.6
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.4e-111 406.4 368 59.5
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 5.6e-108 395.2 267 80.5
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.6e-107 392.5 322 63.0
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 4.7e-107 392.1 362 59.9
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.4e-106 390.6 306 76.5
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.8e-105 385.2 329 63.2
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 7.6e-105 384.8 272 77.6
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-103 380.6 374 55.6
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 7.1e-103 378.3 360 57.5
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 7.8e-102 374.8 218 93.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 3.8e-96 355.9 286 72.7
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.1e-95 354.4 348 59.5
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.3e-92 341.7 224 84.4
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-71 273.9 172 85.5
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-53 214.5 141 85.1
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.8e-51 206.1 124 89.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-47 194.9 142 79.6
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.9e-47 194.1 117 89.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.6e-44 183.7 119 82.4
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.1e-34 151.8 97 80.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.2e-31 139.8 105 70.5
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.7e-27 126.7 79 74.7
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 6.3e-27 125.9 70 81.4
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 9.1e-26 122.1 70 80.0
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 9.5e-23 112.1 81 76.5
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-22 111.7 104 50.0
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 7.5e-20 102.4 81 70.4
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.7e-19 100.1 130 50.0
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-18 98.6 93 61.3
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 4.6e-17 93.2 58 91.4
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 7.3e-15 85.9 53 92.5
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.8e-13 81.3 128 46.9
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-13 81.3 97 53.6
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.1e-13 80.5 59 76.3
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 3.1e-13 80.5 74 52.7
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.6e-12 77.4 42 90.5
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 1.1e-10 72.0 73 54.8
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.3e-08 64.3 347 23.3
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 7.3e-07 59.3 38 89.5
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 8.1e-06 55.8 163 25.8


User provided reference genes

Program Settings