Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.3e-67 259.6 131 100.0
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 8.1e-46 187.2 131 77.9
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 9.6e-39 163.7 127 66.1
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-38 163.3 128 64.8
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-37 159.5 127 64.6
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.9e-35 152.1 120 64.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.4e-34 149.8 128 61.7
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-34 149.8 129 62.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.2e-34 148.3 127 56.7
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.1e-34 147.5 123 61.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-33 146.4 118 61.9
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.5e-33 145.2 125 61.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.5e-33 145.2 125 61.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.6e-33 144.8 123 61.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.0e-33 144.4 116 62.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.0e-32 143.7 123 60.2
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-32 143.3 126 58.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.7e-32 142.9 126 58.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 2.3e-32 142.5 124 61.3
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.0e-32 142.1 123 58.5
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.1e-32 141.4 133 56.4
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.1e-32 141.4 125 59.2
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.1e-32 141.4 129 55.8
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.6e-32 141.0 125 59.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 6.6e-32 141.0 115 60.0
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 8.7e-32 140.6 123 60.2
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.7e-32 140.6 128 59.4
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.1e-31 140.2 116 60.3
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.5e-31 139.0 117 61.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 3.3e-31 138.7 129 56.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.3e-31 138.3 124 59.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.3e-31 138.3 124 59.7
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 9.6e-31 137.1 122 57.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 9.6e-31 137.1 123 59.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.8e-30 135.6 129 57.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 4.8e-30 134.8 120 58.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 8.1e-30 134.0 124 58.1
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-29 133.7 129 55.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-29 133.3 129 55.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.8e-29 132.9 120 59.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-29 132.9 132 59.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.1e-29 132.1 123 59.3
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.0e-29 131.7 122 57.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.3e-29 131.3 117 59.8
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 6.9e-29 131.0 126 58.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.0e-28 129.4 131 58.8
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.0e-28 129.4 118 61.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 4.5e-28 128.3 124 58.1
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.9e-28 127.1 135 57.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.9e-28 127.1 126 57.9
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-27 125.9 129 55.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.2e-27 125.9 130 54.6
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.9e-27 125.6 130 55.4
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.4e-27 124.4 121 53.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.1e-26 123.6 134 53.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.4e-26 123.2 113 55.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-26 123.2 118 59.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.2e-26 122.1 135 51.1
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 5.5e-26 121.3 128 53.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.3e-26 120.6 134 53.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 6.0e-25 117.9 143 52.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.0e-24 117.1 134 50.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.8e-24 116.3 131 51.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.3e-24 115.9 126 52.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-24 115.9 123 49.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.9e-24 115.2 131 52.7
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.7e-24 114.0 125 50.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.5e-23 112.5 134 53.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.3e-23 111.7 131 50.4
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 7.4e-23 110.9 133 50.4
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 7.4e-23 110.9 115 50.4
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 7.4e-23 110.9 122 50.0
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.8e-22 109.0 134 50.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.8e-22 109.0 112 55.4
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.8e-22 108.2 127 50.4
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 6.2e-22 107.8 134 50.0
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.2e-22 107.8 123 52.0
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 8.1e-22 107.5 133 50.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 8.1e-22 107.5 132 50.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-21 107.1 133 50.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.1e-21 107.1 127 50.4
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.4e-21 106.7 134 50.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.4e-21 106.7 134 50.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-21 106.7 103 58.3
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.8e-21 106.3 122 50.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.8e-21 106.3 125 51.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.0e-21 105.1 125 50.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.0e-21 105.1 129 49.6
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.3e-21 104.8 127 48.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.3e-21 104.8 127 48.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.9e-21 104.4 115 50.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.0e-21 104.0 124 46.8
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.2e-20 103.6 126 50.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.2e-20 103.6 126 50.0
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-20 103.6 103 58.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.2e-20 103.6 128 49.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 121 52.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.0e-20 102.8 136 41.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.0e-20 102.8 120 52.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 4.5e-20 101.7 127 49.6
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.8e-20 101.3 94 56.4
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 7.6e-20 100.9 134 48.5
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.0e-19 100.5 135 42.2
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.0e-19 100.5 143 46.2
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-19 100.1 120 51.7
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-19 100.1 111 48.6
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 115 48.7
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 112 48.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 116 48.3
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 116 48.3
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.7e-19 99.8 121 51.2
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.2e-19 99.4 111 48.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.9e-19 99.0 122 50.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.9e-19 99.0 124 44.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.9e-19 99.0 127 50.4
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 3.8e-19 98.6 117 49.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.9e-19 98.2 159 43.4
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 4.9e-19 98.2 127 48.0
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 8.4e-19 97.4 114 47.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-18 96.7 131 48.1
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.4e-18 96.7 124 50.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 7.1e-18 94.4 147 44.2
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 7.1e-18 94.4 142 41.5
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 9.3e-18 94.0 137 43.1
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 41.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.6e-17 93.2 125 46.4
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.7e-17 92.4 133 42.9
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 4.6e-17 91.7 124 41.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 4.6e-17 91.7 119 46.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 6.0e-17 91.3 120 46.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-16 90.1 113 51.3
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 39.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-16 89.4 134 43.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.0e-16 89.0 126 39.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.7e-16 87.8 120 48.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.7e-16 87.8 116 39.7
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.5e-15 86.7 113 46.9
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-15 85.9 128 44.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.3e-15 85.1 121 41.3
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.4e-15 84.3 128 43.8
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-14 83.6 83 53.0
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.3e-14 83.6 83 53.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 131 42.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 6.3e-14 81.3 127 41.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 8.2e-14 80.9 100 46.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.2e-12 77.0 163 33.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 4.5e-12 75.1 153 33.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.9e-11 72.4 157 35.7
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 6.5e-11 71.2 88 45.5
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.1e-10 70.5 164 35.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.4e-10 70.1 115 39.1
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.4e-10 70.1 125 42.4
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.2e-10 68.9 112 42.0
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 5.5e-10 68.2 110 41.8
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.5e-09 65.5 96 42.7
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.5e-09 65.5 120 38.3
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 6.1e-09 64.7 117 35.9
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.0e-08 63.9 129 36.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 138 36.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.3e-08 63.5 124 38.7
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 2.3e-08 62.8 144 32.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.0e-08 62.4 101 41.6
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.9e-07 59.7 132 34.8
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.3e-07 58.9 129 34.9
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.7e-07 58.2 91 38.5
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 9.7e-07 57.4 126 34.1
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 3.7e-06 55.5 106 34.0
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 4.8e-06 55.1 132 35.6
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 8.2e-06 54.3 119 35.3


User provided reference genes

Program Settings