Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.1e-209 733.0 376 100.0
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 1.5e-153 546.6 384 77.9
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.7e-152 543.1 382 76.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 9.1e-151 537.3 384 76.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 5.5e-148 528.1 374 75.1
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 6.1e-147 524.6 379 74.4
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.6e-145 519.2 379 73.6
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.4e-143 513.5 378 72.5
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.7e-142 509.2 373 72.4
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.6e-141 504.6 378 69.8
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 8.6e-141 504.2 378 73.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.5e-140 503.4 384 71.4
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 9.5e-140 500.7 378 71.4
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 4.7e-139 498.4 375 71.5
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.7e-139 498.4 390 70.8
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 8.0e-139 497.7 377 73.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.3e-138 496.1 377 72.1
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.0e-138 495.4 390 70.3
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 6.8e-138 494.6 378 70.9
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 8.9e-138 494.2 379 69.7
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.0e-137 493.0 374 68.7
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 4.4e-137 491.9 378 72.2
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.9e-136 489.2 374 72.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.4e-136 488.0 374 72.7
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 8.3e-136 487.6 380 70.3
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 1.1e-135 487.3 375 71.5
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.9e-135 486.5 381 67.5
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 3.5e-134 482.3 377 71.4
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.3e-133 480.3 375 68.0
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 3.9e-133 478.8 381 68.8
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.6e-133 478.0 379 67.0
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.3e-132 475.7 382 69.1
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 4.3e-132 475.3 379 68.1
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 5.6e-132 474.9 378 69.8
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.1e-131 473.0 380 70.0
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 2.8e-131 472.6 375 69.6
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.6e-131 472.2 378 67.7
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 6.2e-131 471.5 377 69.5
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.1e-130 470.7 377 68.2
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 3.1e-130 469.2 374 67.4
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 6.8e-130 468.0 377 69.8
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.2e-129 467.2 380 67.6
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.5e-129 466.8 367 69.8
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 3.4e-129 465.7 377 68.4
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 7.5e-129 464.5 368 69.0
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 8.3e-128 461.1 387 66.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 7.1e-127 458.0 374 65.8
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 9.2e-127 457.6 388 67.3
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.2e-126 457.2 377 67.6
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 2.1e-126 456.4 378 68.5
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.1e-126 456.4 377 67.9
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 3.5e-126 455.7 379 67.8
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.8e-126 454.5 377 67.4
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 2.3e-125 453.0 376 65.4
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.9e-124 449.9 387 66.4
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.2e-123 447.2 379 66.5
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 1.2e-123 447.2 387 65.9
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 2.8e-123 446.0 375 65.6
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 4.7e-123 445.3 387 65.9
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.1e-122 444.1 381 65.6
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.2e-119 432.6 391 63.4
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 5.4e-119 431.8 382 64.7
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 7.1e-119 431.4 382 64.7
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.2e-118 430.6 374 65.8
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.3e-117 426.4 381 64.8
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 7.3e-116 421.4 380 63.4
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.2e-115 420.6 352 66.5
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 8.1e-115 417.9 386 61.4
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 3.1e-114 416.0 378 61.6
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 5.8e-113 411.8 345 65.2
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 9.9e-113 411.0 347 66.3
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.2e-112 409.8 387 60.2
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 6.4e-112 408.3 370 59.7
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 7.1e-111 404.8 380 61.3
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.2e-110 404.1 379 62.0
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-108 397.5 395 59.2
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 2.5e-108 396.4 377 62.3
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-106 391.0 395 58.5
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.5e-105 387.1 385 58.4
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 5.8e-105 385.2 377 58.9
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 9.9e-105 384.4 383 57.7
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 3.8e-104 382.5 379 59.1
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 4.9e-104 382.1 381 58.0
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.1e-103 380.9 381 58.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.1e-103 380.9 369 58.8
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.4e-103 380.6 369 59.3
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.4e-103 380.6 378 57.9
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.9e-103 380.2 382 58.1
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.4e-103 379.8 382 58.1
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 4.2e-103 379.0 365 59.7
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 5.4e-103 378.6 383 58.0
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 7.1e-103 378.3 379 58.0
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.6e-102 377.1 381 57.7
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 3.5e-102 375.9 381 57.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 6.0e-102 375.2 379 56.7
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.0e-101 374.4 379 56.2
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.7e-101 373.6 381 57.2
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 2.3e-101 373.2 350 63.1
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 2.3e-101 373.2 350 63.1
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 3.0e-101 372.9 381 57.5
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 5.1e-101 372.1 399 55.6
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.3e-100 369.4 383 56.9
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 2.4e-98 363.2 381 55.6
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 5.3e-98 362.1 384 56.2
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 3.4e-97 359.4 382 57.6
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 6.4e-96 355.1 371 56.3
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 4.2e-95 352.4 362 60.8
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.2e-95 352.4 283 68.6
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 4.3e-92 342.4 376 55.1
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 5.3e-90 335.5 389 51.7
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.4e-87 327.4 288 63.5
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 4.2e-87 325.9 372 51.1
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.5e-84 317.4 317 56.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.9e-84 317.0 327 54.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 9.6e-84 314.7 399 48.4
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 5.5e-79 298.9 380 47.9
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.0e-73 280.4 258 55.8
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.5e-68 264.2 169 79.3
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.7e-67 260.8 409 43.3
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 8.2e-67 258.5 295 53.2
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.8e-66 257.3 295 52.9
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 8.0e-54 215.3 212 56.6
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 3.1e-50 203.4 225 52.9
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.2e-47 193.0 210 58.6
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 8.3e-43 178.7 362 40.3
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.0e-37 159.8 143 64.3
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 8.8e-37 158.7 275 38.5
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 3.3e-31 140.2 295 34.9
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.8e-30 137.1 166 53.0
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.8e-29 134.4 130 55.4
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 5.2e-29 132.9 82 75.6
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 7.5e-28 129.0 181 50.8
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.7e-25 120.6 92 69.6
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.4e-20 103.6 118 52.5
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.5e-17 93.6 93 53.8
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 8.9e-13 79.0 224 25.9
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.4e-10 71.6 113 44.2
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.2e-10 70.5 243 25.5
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.2e-10 70.5 70 57.1
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 7.1e-10 69.3 54 63.0
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.3e-08 65.1 51 66.7
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.7e-08 64.7 168 32.1
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.0e-08 63.9 258 26.0
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.9e-07 61.2 89 47.2
Gohir.A07G026501 Gossypium hirsutum HOM05D005260 ORTHO05D216407 8.1e-06 55.8 48 56.2


User provided reference genes

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