Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 9.0e-262 906.4 450 100.0
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.5e-256 889.0 450 98.2
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.1e-240 836.3 452 91.8
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 1.1e-238 829.7 450 91.8
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 3.6e-234 814.7 452 89.6
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 6.3e-231 803.9 452 88.3
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 4.2e-227 791.2 441 88.4
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 4.7e-226 787.7 437 87.6
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 6.1e-226 787.3 431 89.8
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.9e-225 784.6 449 86.9
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.1e-224 783.1 436 89.2
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 5.7e-224 780.8 431 89.6
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.3e-223 779.6 442 87.1
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 1.3e-223 779.6 430 89.8
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.3e-223 779.6 451 86.3
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 4.8e-223 777.7 450 86.0
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 3.1e-222 775.0 434 87.8
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 4.1e-222 774.6 443 86.9
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 4.1e-222 774.6 430 89.1
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 4.1e-222 774.6 433 88.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 5.3e-222 774.2 436 88.3
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 5.3e-222 774.2 438 86.5
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.2e-221 773.1 434 87.6
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.5e-221 772.7 440 87.5
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.0e-221 772.3 477 81.8
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 4.5e-221 771.2 442 86.4
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 5.9e-221 770.8 451 82.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 5.9e-221 770.8 442 85.7
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.3e-220 769.6 441 85.9
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.8e-220 768.1 441 84.8
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.4e-219 766.1 442 87.1
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.4e-219 766.1 417 91.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.9e-219 765.8 442 84.8
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 4.2e-219 764.6 437 86.0
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.6e-218 761.5 443 85.1
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 6.1e-218 760.8 458 83.2
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 8.0e-218 760.4 443 85.1
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 8.0e-218 760.4 443 85.1
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.0e-217 760.0 428 86.4
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.4e-217 759.6 428 86.4
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 3.9e-217 758.1 423 88.2
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 8.8e-217 756.9 442 83.7
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-216 756.5 439 83.6
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.1e-216 756.5 435 84.4
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.5e-216 756.1 437 85.6
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.5e-216 756.1 439 83.8
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 3.3e-216 755.0 417 89.0
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 5.7e-216 754.2 437 85.4
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 1.7e-215 752.7 439 84.1
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 6.3e-215 750.7 439 83.1
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 8.2e-215 750.4 426 85.7
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-214 749.6 439 82.7
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 1.8e-214 749.2 432 85.2
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 3.1e-214 748.4 497 77.7
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 7.7e-213 743.8 440 82.7
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 2.2e-212 742.3 433 83.4
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.9e-212 741.9 431 83.3
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 5.0e-212 741.1 440 82.3
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 8.5e-212 740.3 448 81.7
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 2.5e-211 738.8 445 80.0
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.2e-211 738.4 430 84.2
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.6e-210 736.1 426 84.0
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 2.7e-210 735.3 432 83.1
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 6.1e-210 734.2 428 83.6
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.8e-209 732.6 442 81.7
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.8e-209 732.6 416 86.3
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 2.6e-208 728.8 439 82.2
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.7e-207 726.1 421 84.6
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 3.7e-207 724.9 421 84.3
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.4e-206 723.0 421 83.8
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.4e-206 723.0 421 83.8
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.4e-206 722.2 436 81.2
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 7.0e-206 720.7 457 78.6
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-204 716.8 429 81.6
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.0e-204 716.8 507 73.6
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 2.9e-204 715.3 426 83.3
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-203 713.4 429 80.9
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 3.2e-203 711.8 427 82.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 4.2e-203 711.4 406 87.7
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 4.2e-203 711.4 432 82.4
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.7e-202 708.8 427 81.7
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 3.6e-202 708.4 435 80.5
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 3.6e-202 708.4 440 80.5
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.6e-202 708.4 408 87.0
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 4.7e-202 708.0 388 90.7
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.4e-201 706.4 417 83.5
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 5.2e-201 704.5 401 86.8
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-199 698.0 450 78.2
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-199 698.0 450 78.2
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 1.1e-198 696.8 462 77.1
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.2e-197 693.3 428 80.8
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.5e-197 691.8 387 88.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.7e-196 689.5 439 78.4
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 2.3e-196 689.1 408 83.1
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.4e-193 679.9 442 76.2
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 3.4e-192 675.2 450 76.9
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.4e-190 669.8 433 77.6
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.7e-188 662.9 504 69.2
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 3.8e-188 661.8 425 77.4
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 5.0e-188 661.4 415 78.8
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 9.8e-184 647.1 428 72.9
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 2.2e-183 646.0 388 82.7
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 4.9e-183 644.8 421 72.9
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.4e-182 642.5 417 79.9
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.6e-181 639.8 433 73.9
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 7.8e-181 637.5 370 84.6
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.6e-178 628.6 440 73.6
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.7e-175 619.8 417 75.5
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 8.3e-175 617.5 353 86.7
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 7.0e-174 614.4 378 81.0
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.0e-172 609.0 396 80.1
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-171 605.9 354 84.2
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 4.7e-170 601.7 357 82.9
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 3.2e-166 589.0 314 91.7
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.7e-164 583.2 396 76.5
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 3.9e-164 582.0 425 66.6
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 4.7e-154 548.5 316 87.3
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.9e-143 512.7 340 74.4
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 5.4e-142 508.4 291 86.6
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 1.0e-140 504.2 285 86.0
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 3.0e-132 476.1 441 54.9
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 6.7e-124 448.4 344 71.2
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.0e-120 436.8 448 50.0
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.7e-119 433.7 269 80.7
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 2.2e-119 433.3 235 88.9
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 8.5e-119 431.4 269 83.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 8.8e-116 421.4 291 74.2
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 2.5e-115 419.9 232 87.9
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 5.7e-115 418.7 465 47.7
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 6.3e-114 415.2 321 70.4
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.4e-113 414.1 229 85.2
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 7.2e-110 401.7 249 81.9
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 2.3e-108 396.7 415 50.1
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.3e-100 370.2 274 70.8
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 7.0e-97 358.6 225 80.9
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 2.0e-96 357.1 459 44.0
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 3.8e-95 352.8 195 87.2
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.8e-92 344.0 199 87.4
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 3.1e-89 333.2 188 82.4
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-85 321.2 213 74.6
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 1.0e-76 291.6 201 75.6
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.8e-76 290.8 321 55.1
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.8e-73 280.8 181 76.2
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 2.5e-62 243.8 139 82.7
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 2.3e-52 210.7 208 55.3
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.3e-47 194.9 150 67.3
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.5e-46 191.4 148 67.6
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 3.6e-45 186.8 123 73.2
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 1.4e-44 184.9 119 75.6
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.5e-43 181.4 221 51.6
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 4.6e-40 169.9 184 56.0
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 8.1e-29 132.5 78 76.9
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 5.3e-28 129.8 138 51.4
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 8.4e-26 122.5 79 67.1
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 8.7e-23 112.5 57 89.5
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 7.4e-22 109.4 91 61.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 7.4e-22 109.4 78 60.3
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 1.3e-21 108.6 75 73.3
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.6e-21 108.2 95 62.1
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.1e-14 85.5 42 90.5
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.3e-14 84.0 56 76.8
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 6.9e-12 76.3 315 26.7
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 1.9e-09 68.2 310 24.5
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 9.3e-09 65.9 358 23.7
MBI07_g17044_MAGBIO Magnolia biondii HOM05D002124 ORTHO05D004058 3.0e-07 60.8 205 26.8
SGA_v2.0_scaffold69G23207 Striga asiatica HOM05D000048 ORTHO05D000436 3.3e-06 57.4 44 65.9


User provided reference genes

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