Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 9.3e-98 360.1 174 100.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.8e-94 348.6 174 96.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 4.8e-94 347.8 174 96.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 4.8e-94 347.8 174 96.6
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 8.1e-94 347.1 174 96.0
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 8.1e-94 347.1 174 95.4
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.8e-93 345.9 174 95.4
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 2.4e-93 345.5 174 95.4
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 5.3e-93 344.4 174 94.8
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 9.0e-93 343.6 174 95.4
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.2e-92 343.2 174 95.4
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 2.0e-92 342.4 174 93.1
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 2.0e-92 342.4 173 95.4
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 2.6e-92 342.0 174 95.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 2.6e-92 342.0 174 92.5
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.6e-92 342.0 174 94.3
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 4.5e-92 341.3 173 95.4
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 7.6e-92 340.5 174 94.8
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 7.6e-92 340.5 172 95.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.3e-91 339.7 174 92.5
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.7e-91 339.3 174 92.5
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.7e-91 339.3 174 93.1
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.7e-91 339.3 174 93.7
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.2e-91 339.0 174 92.5
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.9e-91 337.8 174 93.1
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.9e-91 337.8 174 92.5
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 6.4e-91 337.4 174 94.3
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.4e-91 337.4 174 94.3
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.1e-90 336.7 174 92.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.1e-90 336.7 172 93.0
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.9e-90 335.9 174 92.0
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.4e-90 335.5 174 91.4
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.2e-90 334.7 174 93.7
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 7.1e-90 334.0 174 91.4
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.2e-89 333.2 173 93.1
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.2e-89 333.2 172 92.4
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.7e-89 332.0 172 92.4
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.7e-89 332.0 174 92.0
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 3.5e-89 331.6 172 91.3
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 92.0
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.0e-88 330.1 172 92.4
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.8e-88 329.3 173 90.2
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.8e-88 329.3 174 90.2
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 91.3
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 5.1e-88 327.8 173 90.8
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 6.7e-88 327.4 173 90.2
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 6.7e-88 327.4 174 90.2
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 89.6
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 89.6
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.1e-87 326.6 174 91.4
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.1e-87 326.6 172 90.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.1e-87 326.6 172 90.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.1e-87 326.6 172 90.1
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 90.1
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.5e-87 326.2 174 90.8
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 1.5e-87 326.2 174 88.5
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.9e-87 325.9 174 89.1
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.9e-87 325.9 174 90.2
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.5e-87 325.5 173 89.6
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 4.3e-87 324.7 174 89.1
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 89.5
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 5.6e-87 324.3 172 89.0
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.6e-87 324.3 174 88.5
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 5.6e-87 324.3 172 89.5
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.6e-87 324.3 174 87.9
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 7.4e-87 323.9 173 89.0
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.3e-86 323.2 171 90.1
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.1e-86 322.4 172 90.7
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 87.9
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 87.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 87.8
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 4.8e-86 321.2 171 88.3
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 6.2e-86 320.9 174 87.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 8.1e-86 320.5 174 86.8
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 86.2
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.4e-85 319.7 172 87.8
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.4e-85 319.7 172 87.8
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.4e-85 319.7 174 90.2
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 88.4
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 89.0
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 3.1e-85 318.5 174 88.5
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 3.1e-85 318.5 172 87.2
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 4.0e-85 318.2 225 72.9
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 87.8
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.2e-84 316.6 173 86.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.7e-83 312.8 172 86.0
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 86.6
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.8e-83 311.6 189 81.0
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.1e-82 310.1 171 86.0
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.4e-82 308.9 171 85.4
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 7.1e-82 307.4 180 84.4
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 3.5e-81 305.1 159 92.5
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 3.5e-81 305.1 173 85.0
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 3.0e-80 302.0 165 86.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.9e-80 301.6 158 93.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.3e-72 276.6 149 91.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.2e-70 269.2 151 85.4
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 3.7e-70 268.5 146 89.0
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.4e-69 265.8 174 70.7
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 9.0e-69 263.8 176 71.0
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.2e-68 263.5 137 92.7
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 5.9e-68 261.2 174 67.8
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.3e-67 260.0 174 67.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.5e-66 255.8 147 85.0
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 6.7e-64 247.7 130 92.3
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 4.3e-63 245.0 182 69.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.7e-63 244.6 172 73.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 5.7e-63 244.6 134 90.3
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.7e-62 243.0 127 89.8
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 3.7e-62 241.9 133 87.2
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.1e-61 240.4 130 90.0
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-61 239.6 127 91.3
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-61 239.6 127 91.3
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.4e-61 239.2 128 89.1
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.2e-60 236.9 176 64.8
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.5e-60 236.5 127 88.2
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.6e-60 235.7 130 87.7
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.0e-59 233.8 127 86.6
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.5e-58 228.0 163 73.6
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.1e-53 213.8 147 75.5
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 8.5e-51 204.1 132 76.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 2.1e-49 199.5 128 78.1
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 5.7e-47 191.4 126 74.6
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 9.7e-47 190.7 131 75.6
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.2e-42 174.5 92 92.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.2e-40 168.3 91 91.2
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 3.3e-39 165.6 90 91.1
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.5e-39 164.5 109 76.1
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-38 162.9 95 86.3
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-38 162.9 94 86.2
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.8e-38 161.8 101 84.2
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.1e-37 158.7 98 79.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.7e-36 156.0 80 91.2
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.0e-35 154.1 95 78.9
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.1e-33 146.4 88 79.5
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 9.8e-31 137.5 73 91.8
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.8e-29 133.3 99 68.7
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.4e-29 132.9 77 87.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 7.0e-29 131.3 80 80.0
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 2.9e-27 125.9 192 35.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.3e-26 122.5 67 80.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 2.2e-22 109.8 90 64.4
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 5.9e-20 101.7 57 84.2
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 6.0e-12 75.1 37 83.8


User provided reference genes

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