Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1446.8 724 100.0
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1290.4 723 88.0
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1288.9 723 88.0
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1205.7 722 82.1
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1191.8 724 80.1
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1190.3 723 80.2
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1189.5 724 80.4
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1189.1 731 78.8
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1173.3 724 79.7
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1173.3 737 79.4
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1172.5 724 79.0
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1171.8 724 79.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1169.8 722 78.7
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1165.6 724 78.7
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1165.6 724 78.5
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1163.7 722 78.5
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1161.4 739 76.7
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1161.4 720 78.6
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1158.3 709 79.3
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1157.5 710 80.3
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1152.1 724 78.2
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1133.6 726 76.0
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1126.3 725 77.1
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1122.5 724 76.5
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1122.1 710 78.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1122.1 710 78.0
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 0.0e+00 1114.4 708 75.4
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 0.0e+00 1113.6 770 72.6
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 0.0e+00 1111.7 725 76.3
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1103.2 725 75.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1099.3 680 78.5
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 0.0e+00 1098.2 726 75.5
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 0.0e+00 1096.6 738 73.6
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 0.0e+00 1094.0 718 74.2
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 0.0e+00 1094.0 734 74.4
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 0.0e+00 1090.5 725 74.9
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 0.0e+00 1087.4 723 74.0
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 0.0e+00 1084.7 705 75.6
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 0.0e+00 1084.7 708 73.7
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 0.0e+00 1084.7 716 73.0
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 0.0e+00 1082.8 722 73.5
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 0.0e+00 1080.5 714 74.6
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1080.1 715 73.0
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 0.0e+00 1080.1 715 73.0
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 0.0e+00 1079.3 710 74.6
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 0.0e+00 1078.5 713 73.8
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 0.0e+00 1075.5 714 72.1
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 9.9e-312 1073.2 713 73.5
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 2.0e-311 1072.0 727 71.3
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 2.5e-311 1071.6 714 73.2
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 4.9e-310 1067.4 727 73.7
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 6.4e-310 1067.0 693 73.9
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 2.7e-308 1061.6 729 70.9
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 7.8e-308 1060.1 774 68.6
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 1.1e-306 1056.2 730 73.0
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.9e-306 1055.4 688 73.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 3.6e-305 1051.2 717 72.0
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 4.0e-304 1047.7 702 72.8
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 4.4e-303 1044.3 710 71.8
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 6.4e-302 1040.4 730 69.0
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 1.4e-301 1039.3 711 72.9
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 9.2e-301 1036.6 727 69.9
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 9.2e-301 1036.6 723 70.7
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 2.8e-297 1025.0 693 73.4
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 4.7e-297 1024.2 710 70.1
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.6e-295 1018.5 736 68.9
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.3e-289 999.6 593 82.6
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 1.5e-282 976.1 823 61.6
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 1.2e-279 966.5 710 69.4
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 2.2e-278 962.2 710 67.9
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 4.2e-277 958.0 728 66.5
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 2.5e-274 948.7 720 67.5
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.3e-273 946.4 714 65.8
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 1.6e-273 946.0 550 82.4
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 9.0e-272 940.3 719 67.3
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 9.0e-272 940.3 707 66.3
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.6e-271 938.7 748 64.6
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.9e-269 932.6 614 72.0
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 4.6e-268 927.9 724 64.8
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 2.3e-267 925.6 707 65.6
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 2.3e-267 925.6 707 65.6
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.5e-266 922.9 712 65.3
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 9.7e-266 920.2 712 65.0
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 1.6e-265 919.5 728 64.4
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 6.3e-265 917.5 726 64.0
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 5.9e-263 911.0 629 72.3
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 3.8e-254 881.7 722 62.6
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 4.7e-252 874.8 660 66.5
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 2.2e-249 865.9 727 61.9
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.0e-226 789.6 471 81.7
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 8.3e-225 784.3 608 65.0
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 6.8e-219 764.6 621 60.2
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 8.9e-211 737.6 465 76.8
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.3e-206 723.8 719 53.7
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.8e-195 686.8 472 69.3
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 7.3e-189 664.8 448 76.8
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.8e-188 662.9 464 67.0
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.2e-186 657.5 455 70.8
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 1.7e-185 653.7 468 68.6
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.8e-179 633.6 757 46.2
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 5.1e-174 615.5 737 46.1
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 9.0e-171 604.7 479 64.5
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 5.4e-168 595.5 400 74.0
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 6.0e-167 592.0 380 79.2
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 2.5e-160 570.1 429 64.3
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 2.2e-153 547.0 690 44.6
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 3.8e-145 519.6 421 63.2
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 9.4e-144 515.0 689 44.0
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 7.0e-131 472.2 750 38.3
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 5.0e-129 466.1 736 39.1
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 2.3e-126 457.2 307 73.9
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.8e-124 450.3 295 74.9
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 5.0e-121 439.5 326 67.5
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 8.5e-121 438.7 372 62.4
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.8e-94 351.3 184 90.2
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 1.9e-80 304.7 198 72.7
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 8.1e-79 299.3 244 63.1
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-64 252.3 316 48.1
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.0e-44 186.0 143 69.2
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 3.9e-41 174.1 155 57.4
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 3.9e-41 174.1 149 57.0
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 1.9e-40 171.8 111 75.7
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.6e-39 168.7 174 52.3
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.9e-38 163.3 102 76.5
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.7e-36 158.7 268 38.8
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.6e-34 151.0 126 66.7
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 1.5e-32 145.6 539 26.7
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 7.4e-32 143.3 95 70.5
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.5e-29 135.6 132 55.3
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.9e-28 131.3 83 74.7
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.2e-26 125.9 801 22.6
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.9e-25 120.9 88 67.0
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.4e-22 112.5 64 81.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 2.0e-21 108.6 74 71.6
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.7e-18 97.4 115 53.9
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 5.7e-16 90.5 61 72.1
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.8e-14 85.5 51 78.4
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.4e-14 85.1 56 75.0
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 5.9e-13 80.5 51 76.5
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 1.9e-11 75.5 51 68.6
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.5e-11 75.1 52 65.4
FAN06G4723 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-09 68.9 40 80.0
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 3.0e-09 68.2 97 42.3
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 4.8e-07 60.8 40 70.0


User provided reference genes

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