Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p089231 Quercus lobata HOM05D000098 ORTHO05D000546 9.5e-33 142.9 71 100.0
QL02p089383 Quercus lobata HOM05D000098 ORTHO05D000546 9.5e-25 116.3 69 87.0
QL02p089259 Quercus lobata HOM05D000098 ORTHO05D000546 1.6e-24 115.5 69 85.5
CiPaw.04G173100 Carya illinoinensis HOM05D000098 ORTHO05D000546 8.9e-15 83.2 69 65.2
CiPaw.03G246600 Carya illinoinensis HOM05D000098 ORTHO05D000546 3.7e-13 77.8 72 62.5
Haze_25547 Corylus avellana HOM05D000098 ORTHO05D000546 1.4e-12 75.9 66 60.6
Cfa003400 Carpinus fangiana HOM05D000098 ORTHO05D000546 7.1e-12 73.6 65 58.5
Haze_25548 Corylus avellana HOM05D000098 ORTHO05D000546 1.2e-11 72.8 67 59.7
Cfa003401 Carpinus fangiana HOM05D000098 ORTHO05D000546 2.7e-11 71.6 64 57.8
TAR625G0474 Trochodendron aralioides HOM05D000098 ORTHO05D000546 3.5e-11 71.2 70 60.0
Haze_25549 Corylus avellana HOM05D000098 ORTHO05D000546 1.0e-10 69.7 65 56.9
CiPaw.04G173300 Carya illinoinensis HOM05D000098 ORTHO05D000546 3.0e-10 68.2 60 56.7
MD15G1170000 Malus domestica HOM05D000098 ORTHO05D000546 1.9e-09 65.5 64 54.7
RcHm_v2.0_Chr2g0087971 Rosa chinensis HOM05D000098 ORTHO05D000546 1.9e-09 65.5 63 49.2
QL02p089262 Quercus lobata HOM05D000098 ORTHO05D000546 2.5e-09 65.1 64 59.4
MELO3C004454.2 Cucumis melo HOM05D000098 ORTHO05D000546 9.5e-09 63.2 69 50.7
MD02G1028300 Malus domestica HOM05D000098 ORTHO05D000546 9.5e-09 63.2 65 53.8
MD02G1028600 Malus domestica HOM05D000098 ORTHO05D000546 9.5e-09 63.2 65 53.8
Eucgr.C01501 Eucalyptus grandis HOM05D000098 ORTHO05D000546 2.1e-08 62.0 64 51.6
FvH4_1g02870 Fragaria vesca HOM05D000098 ORTHO05D000546 2.1e-08 62.0 57 52.6
Glyma.06G220800 Glycine max HOM05D000098 ORTHO05D000546 2.1e-08 62.0 71 49.3
Sabra18G0109600 Salix brachista HOM05D000098 ORTHO05D000546 2.1e-08 62.0 71 53.5
Eucgr.C01304 Eucalyptus grandis HOM05D000098 ORTHO05D000546 2.8e-08 61.6 64 51.6
Eucgr.C01445 Eucalyptus grandis HOM05D000098 ORTHO05D000546 2.8e-08 61.6 64 51.6
Eucgr.C01446 Eucalyptus grandis HOM05D000098 ORTHO05D000546 2.8e-08 61.6 64 51.6
Glyma.15G253400 Glycine max HOM05D000098 ORTHO05D000546 6.2e-08 60.5 63 54.0
Rhsim03G0249700 Rhododendron simsii HOM05D000098 ORTHO05D000546 6.2e-08 60.5 70 52.9
FAN19G2041 Fragaria x ananassa HOM05D000098 ORTHO05D000546 8.1e-08 60.1 36 69.4
vmacro06142 Vaccinium macrocarpon HOM05D000098 ORTHO05D000546 8.1e-08 60.1 64 53.1
Dinv36498 Davidia involucrata HOM05D000098 ORTHO05D000546 1.1e-07 59.7 70 52.9
FAN28G0728 Fragaria x ananassa HOM05D000098 ORTHO05D000546 1.8e-07 58.9 54 53.7
Sabra18G0109700 Salix brachista HOM05D000098 ORTHO05D000546 1.8e-07 58.9 71 52.1
FAN23G1268 Fragaria x ananassa HOM05D000098 ORTHO05D000546 2.4e-07 58.5 53 50.9
Nn8g39491 Nelumbo nucifera HOM05D000098 ORTHO05D000546 2.4e-07 58.5 72 48.6
RcHm_v2.0_Chr2g0087991 Rosa chinensis HOM05D000098 ORTHO05D000546 2.4e-07 58.5 66 48.5
Aqoxy1G01575 Aquilegia oxysepala HOM05D000098 ORTHO05D000546 3.1e-07 58.2 70 50.0
Prupe.7G246400 Prunus persica HOM05D000098 ORTHO05D000546 3.1e-07 58.2 73 52.1
QL02p089178 Quercus lobata HOM05D000098 ORTHO05D000546 3.1e-07 58.2 70 47.1
MELO3C010324.2 Cucumis melo HOM05D000098 ORTHO05D015073 4.0e-07 57.8 56 50.0
MD15G1170100 Malus domestica HOM05D000098 ORTHO05D000546 4.0e-07 57.8 65 52.3
Manes.14G134100 Manihot esculenta HOM05D000098 ORTHO05D000546 4.0e-07 57.8 66 43.9
Nn2g12072 Nelumbo nucifera HOM05D000098 ORTHO05D000546 4.0e-07 57.8 64 51.6
Aqoxy7G03669 Aquilegia oxysepala HOM05D001612 ORTHO05D000546 5.2e-07 57.4 70 48.6
ClCG11G003190 Citrullus lanatus HOM05D000098 ORTHO05D000546 5.2e-07 57.4 57 49.1
CsaV3_1G030380 Cucumis sativus L. HOM05D000098 ORTHO05D015073 5.2e-07 57.4 56 48.2
CsaV3_UNG091710 Cucumis sativus L. HOM05D000098 ORTHO05D015073 5.2e-07 57.4 56 48.2
QL02p089156 Quercus lobata HOM05D000098 ORTHO05D000546 5.2e-07 57.4 71 43.7
CsaV3_2G003020 Cucumis sativus L. HOM05D000098 ORTHO05D000546 6.8e-07 57.0 44 59.1
Nn8g39492 Nelumbo nucifera HOM05D000098 ORTHO05D000546 6.8e-07 57.0 72 47.2
ClCG06G011350 Citrullus lanatus HOM05D000098 ORTHO05D015073 8.9e-07 56.6 66 45.5
MELO3C004455.2 Cucumis melo HOM05D000098 ORTHO05D000546 8.9e-07 56.6 57 47.4
MELO3C010323.2 Cucumis melo HOM05D000098 ORTHO05D015073 8.9e-07 56.6 37 59.5
FvH4_1g02860 Fragaria vesca HOM05D000098 ORTHO05D000546 8.9e-07 56.6 54 51.9
Haze_25550 Corylus avellana HOM05D000098 ORTHO05D000546 1.2e-06 56.2 69 47.8
Ciclev10009575m.g Citrus clementina HOM05D000098 ORTHO05D000546 1.5e-06 55.8 63 47.6
PSO162G0001 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO484G0001 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO636G0001 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO782G0768 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO782G2316 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO782G5017 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
PSO813G0001 Papaver somniferum HOM05D000098 ORTHO05D000546 1.5e-06 55.8 59 45.8
Sabra18G0109900 Salix brachista HOM05D000098 ORTHO05D000546 1.5e-06 55.8 43 60.5
TAR653G0002 Trochodendron aralioides HOM05D000098 ORTHO05D000546 1.5e-06 55.8 65 50.8
TWI32G0960 Tripterygium wilfordii HOM05D000098 ORTHO05D000546 2.0e-06 55.5 58 46.6
GSVIVG01017332001 Vitis vinifera HOM05D000098 ORTHO05D000546 2.0e-06 55.5 70 48.6
Aqoxy7G02268 Aquilegia oxysepala HOM05D000098 ORTHO05D000546 2.6e-06 55.1 69 46.4
Ciclev10009458m.g Citrus clementina HOM05D000098 ORTHO05D000546 3.4e-06 54.7 70 45.7
CsaV3_1G030390 Cucumis sativus L. HOM05D000098 ORTHO05D015073 3.4e-06 54.7 37 59.5
Aqoxy7G02267 Aquilegia oxysepala HOM05D000098 ORTHO05D000546 4.4e-06 54.3 69 49.3
Lalb_Chr11g0072211 Lupinus albus HOM05D000098 ORTHO05D000546 4.4e-06 54.3 44 56.8
MBI06_g22404_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000546 4.4e-06 54.3 59 42.4
Nn8g39490 Nelumbo nucifera HOM05D000098 ORTHO05D000546 4.4e-06 54.3 73 50.7
Sed0000004 Sechium edule HOM05D000098 ORTHO05D000546 4.4e-06 54.3 44 54.5
SEGI_37125 Sequoiadendron giganteum HOM05D000332 ORTHO05D000268 4.4e-06 54.3 60 46.7
Mapoly0039s0045 Marchantia polymorpha HOM05D000098 ORTHO05D000546 5.8e-06 53.9 68 44.1
Hma1.2p1_0818F.1_g223480 Hydrangea macrophylla HOM05D000332 ORTHO05D000268 7.6e-06 53.5 65 40.0
MBI01_g20904_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000546 7.6e-06 53.5 69 49.3
Potri.018G129000 Populus trichocarpa HOM05D000098 ORTHO05D000546 7.6e-06 53.5 71 50.7
Thecc.09G129500 Theobroma cacao HOM05D000098 ORTHO05D000546 7.6e-06 53.5 70 48.6
TAR625G1043 Trochodendron aralioides HOM05D000098 ORTHO05D000546 7.6e-06 53.5 60 51.7
GSVIVG01015562001 Vitis vinifera HOM05D000098 ORTHO05D000546 7.6e-06 53.5 70 44.3
Actinidia38735 Actinidia chinensis HOM05D000098 ORTHO05D000546 9.9e-06 53.1 70 50.0
Sed0017258 Sechium edule HOM05D000098 ORTHO05D000546 9.9e-06 53.1 69 44.9
Sed0020817 Sechium edule HOM05D000098 ORTHO05D000546 9.9e-06 53.1 43 51.2


User provided reference genes

Program Settings