Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 1.2e-241 839.3 408 100.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.5e-207 726.1 408 87.0
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 5.7e-207 724.2 408 86.3
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.3e-206 723.0 408 84.6
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.0e-192 676.8 408 80.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.3e-192 675.6 408 80.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.6e-191 672.2 408 80.1
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.4e-191 671.8 408 80.1
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.1e-189 664.8 408 79.9
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 9.2e-189 663.7 402 80.1
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 4.6e-188 661.4 408 80.4
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.7e-187 659.4 408 78.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 3.0e-187 658.7 410 79.3
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 9.5e-186 653.7 408 78.7
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.3e-184 649.0 408 77.2
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 8.9e-184 647.1 408 75.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 7.5e-183 644.0 408 76.0
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.3e-182 643.3 408 77.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.4e-181 639.8 420 74.8
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 9.2e-181 637.1 410 76.1
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.6e-180 636.3 409 76.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.7e-180 635.6 408 76.7
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 3.5e-180 635.2 417 75.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.0e-179 633.6 410 76.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.9e-179 631.7 406 74.6
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.5e-178 629.8 414 75.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.6e-178 627.9 407 74.9
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.1e-177 625.9 399 75.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 4.7e-177 624.8 394 77.9
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.2e-175 620.2 400 75.2
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.6e-175 619.0 409 73.6
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.4e-175 618.2 408 74.0
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.8e-175 617.8 413 73.6
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 7.5e-175 617.5 415 74.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 7.5e-175 617.5 408 73.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.9e-174 615.5 415 73.7
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.9e-173 612.8 388 76.5
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 3.2e-173 612.1 417 73.4
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 4.1e-173 611.7 409 73.8
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 7.1e-173 610.9 407 73.7
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.6e-172 609.8 410 71.0
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.5e-172 608.6 388 76.0
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.6e-172 608.2 391 76.0
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.0e-172 607.8 408 71.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.3e-171 605.9 408 72.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.3e-171 605.9 387 75.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 3.0e-171 605.5 409 73.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 1.1e-170 603.6 408 71.6
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 9.5e-170 600.5 399 74.4
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.2e-169 600.1 408 74.0
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.1e-169 599.4 403 72.7
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.8e-169 599.0 401 73.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 4.7e-169 598.2 407 71.7
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 4.7e-169 598.2 389 75.1
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.1e-168 597.0 388 74.5
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.1e-168 595.5 391 71.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 4.0e-168 595.1 409 70.9
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.2e-167 593.6 410 70.0
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.0e-167 592.8 408 71.3
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 3.4e-167 592.0 386 73.3
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 4.4e-167 591.7 408 70.6
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 4.4e-167 591.7 405 71.1
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.9e-166 588.2 408 71.6
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.9e-166 588.2 408 71.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 4.9e-166 588.2 391 73.4
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 6.4e-166 587.8 408 70.8
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 3.2e-165 585.5 408 70.6
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 7.1e-165 584.3 396 73.0
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 7.1e-165 584.3 410 72.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.1e-164 582.8 403 71.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.7e-164 582.4 410 70.5
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.7e-164 582.4 396 72.7
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.5e-164 582.0 412 70.6
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 6.0e-164 581.3 393 71.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 6.0e-164 581.3 409 70.9
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 7.8e-164 580.9 460 68.0
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.0e-163 580.5 406 71.7
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.3e-163 580.1 406 69.5
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.3e-163 579.3 412 72.8
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.9e-163 578.6 404 70.8
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 3.9e-163 578.6 363 77.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 3.9e-163 578.6 396 72.5
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 6.6e-163 577.8 411 70.1
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.1e-162 577.0 404 71.0
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.3e-162 575.5 408 70.6
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.3e-162 575.5 408 72.1
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 4.3e-162 575.1 393 72.3
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.3e-162 575.1 409 70.9
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 4.3e-162 575.1 406 70.7
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 7.3e-162 574.3 411 69.1
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.2e-161 573.5 407 69.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.1e-161 572.8 395 71.6
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.6e-161 572.0 413 71.9
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.8e-160 569.7 389 71.2
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 5.3e-160 568.2 386 71.5
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 5.3e-160 568.2 386 71.5
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-159 565.8 389 71.0
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.6e-159 565.8 389 73.0
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.4e-159 565.5 390 70.0
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 6.4e-158 561.2 389 72.5
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.1e-157 560.5 417 67.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.9e-157 559.7 410 67.8
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.3e-155 553.5 398 67.6
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 3.9e-155 552.0 364 74.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 7.3e-154 547.7 404 67.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.2e-153 544.7 391 68.5
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.4e-152 542.7 410 68.0
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 3.1e-152 542.3 416 65.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 3.4e-151 538.9 405 66.4
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.4e-149 533.5 418 65.6
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.9e-149 533.1 388 67.8
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 2.4e-149 532.7 388 67.3
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.4e-149 532.7 307 83.1
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.8e-147 526.6 388 67.0
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 8.7e-147 524.2 390 67.7
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.1e-146 523.9 391 65.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-145 520.4 408 64.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.4e-144 516.9 390 66.7
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.4e-144 516.2 357 71.4
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 9.0e-144 514.2 384 65.4
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.8e-139 500.0 387 64.6
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 2.3e-139 499.6 396 65.7
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-138 497.3 311 77.2
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.9e-138 496.5 387 64.1
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 4.3e-138 495.4 389 63.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.5e-134 481.5 390 61.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.4e-133 480.3 408 61.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.2e-129 464.5 389 60.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.3e-128 461.8 263 84.4
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.2e-117 424.9 282 73.8
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.7e-108 396.4 282 69.1
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.3e-107 393.3 225 79.6
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.0e-107 392.9 228 78.5
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 4.5e-103 379.0 282 65.2
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 8.0e-100 368.2 387 50.4
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.6e-92 344.0 400 48.2
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.0e-91 339.3 274 58.4
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 4.4e-90 335.9 421 45.1
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 5.4e-88 328.9 234 68.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.5e-85 320.1 253 61.3
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.3e-77 293.1 174 80.5
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.4e-74 283.1 197 73.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.5e-66 257.7 170 74.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.4e-64 250.4 297 46.5
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 6.2e-60 235.7 203 57.1
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.7e-57 227.6 167 66.5
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-50 204.9 168 60.7
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-46 189.9 164 59.1
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 2.8e-44 183.7 112 80.4
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.1e-43 180.3 146 62.3
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.4e-42 176.8 287 35.5
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-36 157.9 234 43.2
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-35 154.5 82 85.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 8.4e-33 145.6 181 45.3
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 6.7e-30 136.0 304 31.2
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.7e-30 136.0 295 32.5
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.4e-27 128.3 239 36.4
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 9.0e-27 125.6 76 78.9
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.5e-26 124.8 304 33.9
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.2e-25 120.9 326 30.4
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-22 111.7 64 75.0
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-22 110.2 64 73.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.7e-22 109.4 64 73.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 4.8e-20 103.2 249 30.5
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.1e-19 100.5 233 31.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 6.5e-17 92.8 146 39.7
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.8e-14 84.7 89 48.3
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 8.7e-14 82.4 171 34.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.4e-11 74.3 74 50.0
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.5e-09 65.9 119 37.0
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-08 65.5 38 73.7


User provided reference genes

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