Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p086759 Quercus lobata HOM05D000005 ORTHO05D013544 1.8e-179 632.5 326 100.0
QL09p003416 Quercus lobata HOM05D000005 ORTHO05D013544 4.2e-144 515.0 298 88.9
QL09p002392 Quercus lobata HOM05D000005 ORTHO05D013544 5.8e-93 345.1 333 61.3
QL07p003421 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-85 320.1 298 58.7
QL03p000629 Quercus lobata HOM05D000005 ORTHO05D013544 2.3e-81 306.6 224 69.2
QL09p002197 Quercus lobata HOM05D000005 ORTHO05D000012 9.3e-75 284.6 302 56.0
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 6.6e-73 278.5 327 49.8
QL03p000619 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-72 277.7 289 55.7
QL09p002721 Quercus lobata HOM05D000005 ORTHO05D000012 5.6e-72 275.4 230 62.6
QL05p019911 Quercus lobata HOM05D000005 ORTHO05D000294 2.0e-69 266.9 260 55.4
QL09p002277 Quercus lobata HOM05D000005 ORTHO05D000012 9.9e-61 238.0 257 52.9
QL07p005124 Quercus lobata HOM05D000005 ORTHO05D000012 4.9e-60 235.7 294 48.6
QL04p075253 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-59 234.2 298 48.0
QL09p007069 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-57 227.6 231 54.5
QL09p003588 Quercus lobata HOM05D000005 ORTHO05D013544 1.8e-57 227.3 293 49.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.9e-56 223.8 230 53.5
QL09p002343 Quercus lobata HOM05D000005 ORTHO05D000012 5.6e-56 222.2 280 50.7
QL09p002485 Quercus lobata HOM05D000005 ORTHO05D000012 3.7e-55 219.5 285 49.1
QL09p002262 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-49 200.3 207 53.1
QL05p005294 Quercus lobata HOM05D000005 ORTHO05D013544 1.1e-48 198.0 403 36.7
QL09p003491 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-48 195.3 279 43.0
QL04p075278 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-45 185.7 248 47.2
QL09p002567 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-44 182.6 308 38.6
QL07p047299 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-38 164.1 282 41.5
QL05p010503 Quercus lobata HOM05D000005 ORTHO05D000012 6.9e-38 162.2 284 40.5
QL09p003562 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-35 154.5 280 37.9
QL09p003444 Quercus lobata HOM05D019167 ORTHO05D013544 2.5e-35 153.7 240 40.0
QL03p060869 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-34 150.2 310 36.1
QL03p060940 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-34 150.2 310 36.1
QL04p074333 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-34 150.2 284 39.1
QL04p074877 Quercus lobata HOM05D000005 ORTHO05D000012 4.7e-34 149.4 284 39.1
QL07p047246 Quercus lobata HOM05D019167 ORTHO05D013544 6.1e-34 149.1 234 41.5
QL09p003532 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-33 146.7 286 36.4
QL07p047241 Quercus lobata HOM05D000005 ORTHO05D013544 3.3e-32 143.3 254 39.8
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-32 143.3 218 40.4
QL04p053542 Quercus lobata HOM05D000005 ORTHO05D000012 2.2e-31 140.6 294 38.4
QL09p003516 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-31 140.2 291 36.4
QL07p047210 Quercus lobata HOM05D000002 ORTHO05D000001 6.3e-31 139.0 258 35.3
QL03p009494 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-29 132.5 297 36.4
QL03p030208 Quercus lobata HOM05D000005 ORTHO05D013544 5.0e-28 129.4 176 41.5
QL09p051711 Quercus lobata HOM05D000254 ORTHO05D000165 1.2e-26 124.8 209 39.2
QL04p074853 Quercus lobata HOM05D000005 ORTHO05D000012 3.9e-25 119.8 259 37.5
QL04p075018 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-23 112.8 268 35.1
QL03p060891 Quercus lobata HOM05D000005 ORTHO05D000012 8.2e-23 112.1 286 31.1
QL03p061059 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-22 110.9 312 29.5
QL03p000676 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-20 102.8 192 37.0
QL09p002315 Quercus lobata HOM05D000005 ORTHO05D013544 5.5e-19 99.4 127 43.3
QL03p060976 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-18 98.2 280 29.6
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 3.3e-16 90.1 315 28.3
RcHm_v2.0_Chr1g0322041 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-15 87.4 307 27.4
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-14 84.7 303 27.7
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 7.0e-14 82.4 303 28.1
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-13 81.6 303 27.7
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 1.2e-13 81.6 303 27.1
RcHm_v2.0_Chr1g0319431 Rosa chinensis HOM05D000005 ORTHO05D001748 1.6e-13 81.3 303 27.7
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 1.6e-13 81.3 318 26.1
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-13 81.3 299 27.8
RcHm_v2.0_Chr2g0101061 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-13 80.9 302 27.8
RcHm_v2.0_Chr6g0250771 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-13 80.9 258 28.7
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-13 79.7 300 26.7
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-13 79.7 258 28.7
MD10G1006400 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-12 78.2 285 28.8
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-12 77.8 288 27.4
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-12 77.8 304 26.6
Manes.02G199800 Manihot esculenta HOM05D000005 ORTHO05D000012 2.2e-12 77.4 294 26.2
Dinv01986 Davidia involucrata HOM05D000005 ORTHO05D000012 2.9e-12 77.0 301 26.2
Dinv20734 Davidia involucrata HOM05D000005 ORTHO05D000012 2.9e-12 77.0 301 26.6
FAN01G0224 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.9e-12 77.0 342 27.5
FvH4_2g00550 Fragaria vesca HOM05D000005 ORTHO05D000012 3.8e-12 76.6 289 27.3
RcHm_v2.0_Chr6g0250801 Rosa chinensis HOM05D000005 ORTHO05D001748 5.0e-12 76.3 318 26.1
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.5e-12 75.9 303 25.7
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 6.5e-12 75.9 288 26.0
Cpa.g.sc27.17 Carica papaya HOM05D000005 ORTHO05D000012 8.5e-12 75.5 306 26.8
FvH4_7g12160 Fragaria vesca HOM05D000005 ORTHO05D000012 8.5e-12 75.5 301 27.2
FAN03G2131 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.5e-12 75.5 304 28.6
FAN06G1767 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.5e-12 75.5 301 27.2
FAN06G2994 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.5e-12 75.5 301 27.2
MD10G1006800 Malus domestica HOM05D000005 ORTHO05D000012 8.5e-12 75.5 285 27.0
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 8.5e-12 75.5 303 25.4
Cc11_g00700 Coffea canephora HOM05D000005 ORTHO05D000012 1.1e-11 75.1 296 28.0
FAN10G1656 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-11 75.1 303 27.1
Potri.013G098550 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.5e-11 74.7 267 27.0
Cc08_g06840 Coffea canephora HOM05D000005 ORTHO05D000012 1.9e-11 74.3 293 28.7
MD10G1007300 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-11 73.9 294 27.2
Manes.01G120200 Manihot esculenta HOM05D000005 ORTHO05D000012 2.5e-11 73.9 288 27.4
Potri.013G098000 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.5e-11 73.9 270 26.7
Potri.017G104901 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.2e-11 73.6 272 29.0
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-11 73.2 288 26.0
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-11 73.2 303 26.4
RcHm_v2.0_Chr6g0251011 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-11 73.2 295 27.1
Dinv11663 Davidia involucrata HOM05D000005 ORTHO05D000012 5.5e-11 72.8 290 26.6
RcHm_v2.0_Chr5g0055671 Rosa chinensis HOM05D000005 ORTHO05D000012 5.5e-11 72.8 301 27.6
Cc00_g25590 Coffea canephora HOM05D000005 ORTHO05D000012 2.1e-10 70.9 291 27.8
Potri.017G103101 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-10 70.9 274 28.5
Potri.017G104301 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-10 70.9 274 28.5
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 2.1e-10 70.9 358 26.5
arahy.Tifrunner.gnm1.ann1.4B9DJ7 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.7e-10 70.5 231 26.8
Prupe.8G005600 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-10 70.5 332 27.4
arahy.Tifrunner.gnm1.ann1.02TVGL Arachis hypogaea HOM05D000005 ORTHO05D000012 3.6e-10 70.1 231 26.4
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.6e-10 70.1 296 27.4
Prupe.2G059000 Prunus persica HOM05D000005 ORTHO05D000012 3.6e-10 70.1 260 27.7
Prupe.8G027000 Prunus persica HOM05D000005 ORTHO05D000012 3.6e-10 70.1 330 27.0
QL09p052750 Quercus lobata HOM05D000005 ORTHO05D000012 4.7e-10 69.7 360 24.4
MD12G1068700 Malus domestica HOM05D000005 ORTHO05D010574 8.0e-10 68.9 297 26.6
QL09p000751 Quercus lobata HOM05D000005 ORTHO05D000012 8.0e-10 68.9 264 26.5
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-09 68.6 299 25.8
Potri.013G097000 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.0e-09 68.6 270 25.9
Solyc04g056570.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.4e-09 68.2 303 22.4
Prupe.8G005100 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-09 67.8 276 27.2
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-09 67.8 302 25.8
Sabra13G0083200 Salix brachista HOM05D000005 ORTHO05D000012 3.0e-09 67.0 267 25.5
FvH4_2g00570 Fragaria vesca HOM05D000005 ORTHO05D000012 4.0e-09 66.6 297 25.9
MD01G1189200 Malus domestica HOM05D000005 ORTHO05D000012 4.0e-09 66.6 92 44.6
Potri.013G097300 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.0e-09 66.6 274 28.5
Potri.017G103701 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.0e-09 66.6 277 28.9
FAN27G2200 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.8e-09 65.9 301 25.2
Potri.013G097832 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.8e-09 65.9 273 27.8
Prupe.8G026800 Prunus persica HOM05D000005 ORTHO05D000012 6.8e-09 65.9 296 27.7
QL04p034816 Quercus lobata HOM05D000005 ORTHO05D000012 6.8e-09 65.9 302 23.5
RcHm_v2.0_Chr1g0323221 Rosa chinensis HOM05D000005 ORTHO05D000012 8.8e-09 65.5 301 25.2
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 8.8e-09 65.5 302 25.2
Ca_23602_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 1.2e-08 65.1 274 27.4
Prupe.8G056700 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-08 65.1 297 27.3
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-08 64.7 161 28.6
MD05G1022400 Malus domestica HOM05D000005 ORTHO05D000012 2.6e-08 63.9 293 25.9
Manes.02G202100 Manihot esculenta HOM05D000005 ORTHO05D000012 2.6e-08 63.9 309 27.5
Cc00_g23220 Coffea canephora HOM05D000005 ORTHO05D000012 3.4e-08 63.5 186 28.5
Sabra13G0084500 Salix brachista HOM05D000005 ORTHO05D000294 3.4e-08 63.5 176 31.2
MD08G1230100 Malus domestica HOM05D003506 ORTHO05D000012 5.7e-08 62.8 116 37.1
QL10p023232 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-08 62.8 295 24.7
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 5.7e-08 62.8 302 25.2
Cc00_g15130 Coffea canephora HOM05D000005 ORTHO05D000012 7.5e-08 62.4 199 28.1
MD05G1020100 Malus domestica HOM05D000005 ORTHO05D000012 7.5e-08 62.4 292 26.0
QL10p021785 Quercus lobata HOM05D000005 ORTHO05D000012 9.8e-08 62.0 304 23.7
Sabra17G0088300 Salix brachista HOM05D000005 ORTHO05D001748 9.8e-08 62.0 130 36.9
CANSAT54G2110 Cannabis sativa HOM05D000005 ORTHO05D000012 1.3e-07 61.6 318 24.8
HanXRQChr04g0101181 Helianthus annuus HOM05D000005 ORTHO05D000012 1.3e-07 61.6 279 25.1
MD01G1190700 Malus domestica HOM05D000005 ORTHO05D015660 1.3e-07 61.6 92 44.6
MD10G1019200 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-07 61.6 290 26.6
Prupe.8G046600 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-07 61.6 297 25.6
QL05p015996 Quercus lobata HOM05D000005 ORTHO05D000012 1.3e-07 61.6 309 24.3
Ciclev10023905m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.7e-07 61.2 273 27.1
Nn8g40955 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.7e-07 61.2 82 42.7
QL09p006806 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-07 61.2 295 22.4
Prupe.1G524000 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-07 60.8 268 26.9
Eucgr.F01325 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.8e-07 60.5 291 26.5
Prupe.8G046700 Prunus persica HOM05D000005 ORTHO05D000012 2.8e-07 60.5 259 24.3
Sabra17G0088700 Salix brachista HOM05D000005 ORTHO05D026084 2.8e-07 60.5 165 33.3
FvH4_1g07020 Fragaria vesca HOM05D000005 ORTHO05D000012 3.7e-07 60.1 312 24.4
Cc08_g06820 Coffea canephora HOM05D000005 ORTHO05D000012 4.8e-07 59.7 199 27.1
Peaxi162Scf00177g01132 Petunia axillaris HOM05D000005 ORTHO05D001748 4.8e-07 59.7 291 24.1
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 6.3e-07 59.3 275 26.2
MD01G1190100 Malus domestica HOM05D000005 ORTHO05D000012 6.3e-07 59.3 68 50.0
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 6.3e-07 59.3 113 40.7
QL03p008616 Quercus lobata HOM05D000005 ORTHO05D001748 6.3e-07 59.3 293 24.9
QL04p067676 Quercus lobata HOM05D000005 ORTHO05D000012 6.3e-07 59.3 322 23.3
RcHm_v2.0_Chr1g0322741 Rosa chinensis HOM05D000005 ORTHO05D001748 6.3e-07 59.3 57 49.1
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.1e-06 58.5 70 42.9
Cfa008053 Carpinus fangiana HOM05D000005 ORTHO05D010574 1.4e-06 58.2 161 26.7
MD05G1148600 Malus domestica HOM05D000005 ORTHO05D000012 1.4e-06 58.2 96 38.5
Thecc.06G018500 Theobroma cacao HOM05D000005 ORTHO05D000012 1.4e-06 58.2 264 26.9
FAN28G1466 Fragaria x ananassa HOM05D000005 ORTHO05D012233 1.8e-06 57.8 251 25.1
MD01G1189000 Malus domestica HOM05D000005 ORTHO05D001748 1.8e-06 57.8 68 47.1
Prupe.8G027100 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-06 57.8 179 31.3
QL09p052440 Quercus lobata HOM05D000005 ORTHO05D000294 1.8e-06 57.8 256 26.6
Haze_17817 Corylus avellana HOM05D000005 ORTHO05D010574 2.4e-06 57.4 142 28.2
Lsat_1_v5_gn_2_11741 Lactuca sativa HOM05D000005 ORTHO05D000012 2.4e-06 57.4 209 27.3
Cc00_g23040 Coffea canephora HOM05D000005 ORTHO05D000012 3.1e-06 57.0 186 28.5
MD08G1229600 Malus domestica HOM05D003506 ORTHO05D004063 3.1e-06 57.0 70 48.6
QL09p002670 Quercus lobata HOM05D000005 ORTHO05D001748 3.1e-06 57.0 200 30.5
MD05G1148200 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-06 56.6 95 36.8
RcHm_v2.0_Chr1g0322701 Rosa chinensis HOM05D000005 ORTHO05D001748 4.1e-06 56.6 151 30.5
MD10G1135900 Malus domestica HOM05D000005 ORTHO05D000012 5.4e-06 56.2 235 24.3
Sabra17G0089000 Salix brachista HOM05D000005 ORTHO05D026084 5.4e-06 56.2 276 27.5
GSVIVG01004877001 Vitis vinifera HOM05D000005 ORTHO05D000012 7.0e-06 55.8 295 25.8
FAN10G3998 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.1e-06 55.5 223 25.1
MD07G1261100 Malus domestica HOM05D000005 ORTHO05D000012 9.1e-06 55.5 92 39.1


User provided reference genes

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