Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 7.8e-253 876.7 463 100.0
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.8e-220 769.2 463 85.1
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 2.5e-219 765.4 463 84.9
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.6e-218 762.7 463 83.8
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 2.3e-212 742.3 463 82.1
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 9.7e-203 710.3 467 78.6
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 4.1e-201 704.9 471 77.5
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 8.5e-199 697.2 466 76.4
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 1.9e-198 696.0 402 86.3
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.8e-196 689.5 406 84.0
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 6.7e-196 687.6 475 77.1
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 2.6e-195 685.6 475 74.7
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 9.7e-195 683.7 468 75.2
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 2.2e-194 682.6 469 76.3
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 5.3e-193 677.9 472 74.8
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 7.7e-192 674.1 467 74.1
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.0e-191 673.7 472 76.7
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 2.2e-191 672.5 471 74.1
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 2.9e-191 672.2 471 76.9
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 5.0e-191 671.4 410 81.2
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.1e-190 670.2 472 73.7
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 1.9e-190 669.5 468 73.7
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.2e-189 666.8 468 73.1
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.2e-189 666.8 466 75.3
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.1e-189 666.0 471 72.8
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 6.1e-189 664.5 468 75.0
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 4.0e-188 661.8 408 80.1
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 4.0e-188 661.8 472 73.5
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 8.8e-188 660.6 464 73.1
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 5.7e-187 657.9 460 75.0
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 2.8e-186 655.6 467 73.4
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 4.8e-186 654.8 474 72.8
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.3e-186 654.4 467 74.3
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.4e-185 653.3 463 74.5
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.8e-185 652.9 467 74.3
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.4e-185 652.5 464 72.2
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 4.1e-185 651.7 410 78.8
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 7.0e-185 651.0 389 82.8
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.1e-185 650.6 467 74.5
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 2.7e-184 649.0 464 71.8
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 4.5e-184 648.3 384 85.2
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.5e-184 648.3 467 74.1
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 5.9e-184 647.9 404 79.5
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 1.7e-183 646.4 459 72.8
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 2.2e-183 646.0 460 73.9
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 2.2e-183 646.0 460 73.7
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 2.9e-183 645.6 404 78.5
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 3.8e-183 645.2 477 71.9
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 8.5e-183 644.0 462 73.8
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 5.5e-182 641.3 455 72.3
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.2e-181 640.2 461 72.7
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 1.4e-180 636.7 467 71.5
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.0e-180 635.6 372 83.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 4.0e-180 635.2 378 82.8
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 2.0e-179 632.9 463 72.6
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 2.0e-179 632.9 470 70.9
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 2.8e-178 629.0 414 77.3
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 2.8e-178 629.0 467 70.9
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 3.7e-178 628.6 470 72.3
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 8.3e-178 627.5 474 70.9
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.4e-177 625.9 424 76.7
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 2.0e-176 622.9 399 77.7
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.3e-175 620.2 466 71.0
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.3e-175 620.2 472 69.9
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.7e-175 619.8 423 73.3
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 2.3e-175 619.4 409 74.3
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 2.3e-175 619.4 462 71.9
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 3.8e-175 618.6 414 74.9
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 5.0e-175 618.2 473 69.3
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 5.0e-175 618.2 394 77.7
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.6e-173 613.2 378 79.4
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 2.1e-173 612.8 463 69.8
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 1.4e-172 610.1 464 70.5
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 6.8e-172 607.8 463 71.5
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 8.9e-172 607.4 469 68.7
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.5e-171 606.7 415 74.5
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 2.6e-171 605.9 477 66.5
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 1.1e-169 600.5 395 75.9
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 4.1e-169 598.6 383 77.0
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 4.6e-168 595.1 398 73.9
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 5.0e-167 591.7 420 70.5
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 4.3e-166 588.6 409 70.9
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 5.6e-166 588.2 408 72.3
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 1.6e-165 586.6 409 71.4
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 3.6e-165 585.5 409 71.6
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 8.0e-165 584.3 411 70.8
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.0e-164 583.9 396 73.0
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 3.1e-164 582.4 410 70.7
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 6.8e-164 581.3 399 71.7
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 2.2e-162 576.2 411 70.1
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 8.3e-162 574.3 461 67.2
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 2.4e-161 572.8 411 69.8
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 4.1e-161 572.0 411 69.6
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 4.1e-161 572.0 411 69.6
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 2.0e-160 569.7 410 69.0
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 2.0e-160 569.7 410 69.0
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.5e-150 537.0 314 83.8
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 3.3e-150 535.8 468 60.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 5.8e-147 525.0 463 58.5
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 7.6e-147 524.6 400 65.8
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.4e-145 518.5 356 76.7
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 1.7e-143 513.5 395 64.8
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.9e-142 510.0 344 75.0
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.2e-120 437.6 354 63.6
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 9.3e-113 411.4 264 78.8
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.1e-108 397.9 391 53.7
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 5.9e-107 392.1 375 53.9
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.5e-105 386.7 382 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 8.7e-103 378.3 413 47.5
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.8e-100 370.5 374 51.1
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.6e-96 357.5 402 50.2
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.8e-84 317.4 321 51.1
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.2e-78 298.1 400 46.5
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 4.8e-77 292.7 340 44.7
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.1e-57 228.4 136 76.5
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.1e-52 211.8 260 50.0
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 8.3e-45 185.7 104 86.5
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 2.1e-40 171.0 99 74.7
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 5.2e-31 139.8 94 77.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.6e-30 137.5 94 76.6
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.1e-28 132.1 285 34.7
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.1e-27 127.9 73 86.3
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.5e-27 127.1 258 34.9
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.3e-26 125.2 89 74.2
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.5e-25 121.7 83 74.7
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 5.6e-25 119.8 145 55.2
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 5.8e-22 109.8 356 29.5
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.4e-21 106.3 145 51.7
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 8.1e-16 89.4 73 67.1
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.8e-15 88.2 136 47.8
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.6e-14 84.3 122 41.8
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 2.1e-08 64.7 99 44.4
SEGI_25977 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 9.9e-06 55.8 56 50.0


User provided reference genes

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