Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 4443.3 2217 100.0
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 3502.6 2228 79.4
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 3492.2 2227 79.3
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 3439.8 2229 78.0
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 3086.2 2238 69.9
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3061.9 2241 70.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 3003.8 2235 68.9
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2993.0 2242 67.9
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2979.1 2236 67.8
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2974.1 2231 68.0
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2962.6 2226 68.1
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2942.9 2240 67.6
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2941.4 2233 67.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2934.8 2223 67.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2933.3 2233 67.2
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2925.2 2237 67.2
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2924.0 2238 67.6
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2923.3 2223 67.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2901.3 2241 66.7
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2879.4 2240 66.6
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2879.4 2259 66.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2868.6 2237 66.4
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2859.7 2238 66.4
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2835.4 2243 65.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2834.3 2244 65.5
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2785.0 2244 64.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2781.5 2241 64.6
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2780.7 2228 64.2
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2772.7 2244 64.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2758.0 2228 63.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2750.3 2230 64.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2743.0 2227 63.6
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2736.1 2236 64.1
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2735.7 2239 64.4
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2733.7 2237 64.1
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2729.5 2243 63.0
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2724.9 2245 63.4
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2723.3 2240 63.3
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2709.5 2238 63.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2708.3 2210 63.3
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2705.2 2243 63.1
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2703.3 2240 63.2
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2680.6 2232 62.1
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2654.4 2244 61.5
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2640.9 2239 61.1
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2634.8 2243 61.5
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2627.0 2244 61.6
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2625.9 1828 71.8
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2606.2 2237 60.7
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2601.6 2236 61.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2592.0 2235 60.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2588.1 1899 68.6
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2586.2 2245 60.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2582.0 1825 71.1
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2581.6 2244 60.0
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2581.6 2235 60.3
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2574.3 2234 60.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2566.6 2233 60.1
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2557.3 2234 60.3
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2536.9 2241 60.3
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2528.1 2262 59.4
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2524.2 2259 59.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2520.0 2239 59.6
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2507.2 2233 60.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2499.9 2232 59.7
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2497.2 2260 59.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2474.9 2244 58.3
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2470.7 2249 58.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2469.5 2240 58.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2463.0 1831 69.2
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2452.9 2233 59.2
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2444.1 2232 59.2
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2443.7 2231 59.2
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2441.0 2233 59.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2441.0 2233 59.0
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2439.8 2243 57.2
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2432.9 2230 58.9
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2432.9 2230 58.9
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2432.5 2233 58.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2426.7 2234 58.7
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2369.0 2325 55.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2365.5 1716 69.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2322.4 2251 56.8
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2308.9 2233 57.1
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2285.8 2060 59.9
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2173.3 2324 51.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2117.0 2237 53.3
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2102.4 2232 52.4
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2097.4 2250 51.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1891.3 1421 68.7
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1785.0 2388 43.8
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1649.4 1381 63.5
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1637.5 1712 52.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1476.8 2370 40.2
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1388.6 2391 37.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1388.6 1127 64.5
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1380.5 1200 61.2
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1342.8 2182 39.4
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1320.4 1018 65.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1312.4 2271 37.6
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1214.9 940 66.0
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1207.2 1068 60.6
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1116.7 1435 46.4
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.6e-274 951.0 1018 52.3
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 9.5e-272 941.8 2466 30.3
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 3.7e-260 903.3 787 60.4
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 8.6e-249 865.5 875 54.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.4e-216 756.1 1378 38.4
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 7.9e-210 736.1 729 55.1
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.2e-184 652.5 1014 42.5
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.7e-157 561.6 449 61.7
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 8.9e-145 520.0 2466 24.7
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.6e-104 385.6 375 57.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.1e-78 300.4 290 59.3
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 7.4e-75 287.7 312 48.1
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-70 273.5 301 47.5
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 2.0e-67 263.1 765 28.4
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.7e-59 235.0 232 51.3
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 9.8e-59 234.2 308 42.5
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.0e-57 228.0 176 68.2
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 8.9e-52 211.1 228 47.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 6.8e-44 184.9 267 39.3
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 8.3e-42 177.9 140 66.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 4.9e-34 152.1 222 41.0
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 6.4e-34 151.8 94 78.7
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.3e-34 151.4 117 60.7
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-30 141.0 135 54.1
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.5e-30 140.6 476 28.4
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.6e-29 137.1 287 34.5
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.1e-28 134.4 101 67.3
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 2.3e-28 133.3 111 65.8
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.7e-15 90.5 110 40.9
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.4e-09 70.1 338 23.1
Thecc.08G172300 Theobroma cacao HOM05D005746 ORTHO05D007105 1.1e-06 61.2 54 59.3


User provided reference genes

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