Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 7.5e-242 840.1 425 100.0
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 1.4e-179 633.3 402 82.1
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 8.1e-172 607.4 409 77.8
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 2.2e-169 599.4 407 77.4
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.6e-167 593.2 419 72.8
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 8.7e-166 587.4 411 73.0
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 8.7e-166 587.4 357 82.9
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 7.4e-165 584.3 417 74.8
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.3e-164 583.6 402 76.4
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.6e-164 583.2 409 73.3
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 3.7e-164 582.0 398 74.1
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.6e-162 575.9 360 81.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 4.9e-161 571.6 361 80.6
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 9.3e-160 567.4 392 73.7
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 3.5e-159 565.5 413 72.4
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 6.7e-158 561.2 413 72.2
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 2.5e-157 559.3 376 76.3
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 9.7e-157 557.4 389 73.8
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.3e-156 557.0 389 73.3
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.1e-155 553.9 378 75.4
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.8e-155 553.1 422 69.9
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 2.4e-155 552.7 371 76.8
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 3.1e-155 552.4 413 70.9
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 4.1e-155 552.0 363 75.8
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.3e-153 547.0 423 69.3
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 2.2e-153 546.2 372 75.5
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 2.9e-153 545.8 374 74.9
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 5.0e-153 545.0 372 75.3
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 2.5e-152 542.7 380 72.4
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 5.5e-152 541.6 378 73.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 5.5e-152 541.6 372 75.5
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 7.2e-152 541.2 393 70.2
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.6e-151 540.0 359 75.5
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 1.6e-151 540.0 367 74.9
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.6e-151 540.0 373 74.5
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 2.1e-151 539.7 357 74.8
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 2.7e-151 539.3 359 75.5
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 2.7e-151 539.3 361 74.5
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.8e-150 536.6 353 76.5
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 5.1e-150 535.0 457 64.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 8.8e-150 534.3 445 64.3
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.5e-149 533.5 376 72.3
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.9e-149 533.1 345 77.7
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 3.3e-149 532.3 399 69.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 7.4e-149 531.2 432 65.5
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 3.7e-148 528.9 429 65.0
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 1.1e-147 527.3 350 74.3
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.1e-147 527.3 388 71.6
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.1e-147 525.8 423 67.4
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 4.1e-147 525.4 355 73.8
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 5.3e-147 525.0 359 71.9
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 6.9e-147 524.6 354 73.7
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 9.1e-147 524.2 412 64.8
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 2.9e-145 519.2 351 76.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.9e-145 519.2 361 73.7
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 6.5e-145 518.1 355 73.0
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 1.9e-144 516.5 355 72.4
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 5.5e-144 515.0 424 63.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.2e-143 513.8 359 71.6
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 1.6e-143 513.5 355 72.1
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.1e-143 513.1 405 64.7
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 4.7e-143 511.9 358 72.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.0e-142 510.8 353 71.4
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 1.0e-142 510.8 392 69.1
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 1.8e-142 510.0 421 63.7
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.3e-142 509.6 352 72.2
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 2.3e-142 509.6 353 72.0
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 6.7e-142 508.1 367 70.6
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.1e-141 507.3 411 63.0
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.3e-141 505.8 424 63.0
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 4.4e-141 505.4 397 66.0
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 4.4e-141 505.4 366 70.8
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-140 503.8 424 63.2
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.3e-140 503.8 410 64.6
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.7e-140 503.4 410 64.6
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 1.4e-139 500.4 360 70.0
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.8e-139 500.0 357 70.3
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 1.2e-138 497.3 344 73.5
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 7.7e-138 494.6 365 70.1
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.4e-136 490.3 386 64.2
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 3.6e-135 485.7 420 63.3
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 1.8e-134 483.4 370 69.2
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 8.8e-134 481.1 411 65.2
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 2.4e-131 473.0 311 77.5
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 4.1e-131 472.2 373 65.7
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.3e-129 467.2 348 69.3
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.9e-129 466.1 302 77.8
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 3.8e-129 465.7 345 69.6
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.2e-127 460.7 352 68.2
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 1.4e-126 457.2 315 74.6
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 3.0e-126 456.1 314 71.3
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 2.2e-121 439.9 271 79.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.0e-117 426.8 324 66.7
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.2e-111 407.5 351 58.1
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 2.8e-111 406.4 356 57.6
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.5e-104 381.3 356 55.1
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 4.1e-99 365.9 346 54.6
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.8e-94 350.5 384 56.5
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 3.9e-89 332.8 256 71.5
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.8e-86 323.9 251 62.2
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 2.0e-85 320.5 185 87.0
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.2e-84 317.0 364 48.1
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 1.4e-83 314.3 269 60.6
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 4.3e-72 276.2 181 77.9
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 2.1e-71 273.9 367 43.3
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 5.3e-70 269.2 183 69.9
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 9.9e-69 265.0 421 38.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 9.9e-69 265.0 421 38.7
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 6.6e-65 252.3 411 37.0
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 4.8e-63 246.1 252 54.4
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 9.3e-59 231.9 210 64.3
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.3e-56 223.0 534 29.6
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 4.0e-54 216.5 342 42.4
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 3.7e-47 193.4 389 36.5
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 1.9e-40 171.0 133 59.4
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 1.2e-34 151.8 120 57.5
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 3.7e-23 113.6 69 79.7
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 2.6e-21 107.5 71 76.1
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 4.2e-19 100.1 66 77.3
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.8e-17 94.7 61 70.5
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 8.8e-17 92.4 177 34.5
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.7e-16 89.7 167 37.1
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 7.4e-16 89.4 68 66.2
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.7e-15 87.0 179 31.8
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.5e-13 80.1 171 31.0
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 5.5e-11 73.2 92 48.9
QL02p001457 Quercus lobata HOM05D002735 ORTHO05D003048 1.7e-07 61.6 47 74.5
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 8.3e-07 59.3 46 58.7
SEGI_18941 Sequoiadendron giganteum HOM05D006074 ORTHO05D026256 2.4e-06 57.8 49 63.3


User provided reference genes

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