Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 7.6e-283 976.5 484 100.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.3e-242 842.8 494 84.4
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.4e-236 822.8 532 78.4
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.6e-235 819.3 483 84.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.6e-235 818.5 495 81.0
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.2e-234 815.5 487 83.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.8e-229 798.5 484 82.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.7e-229 798.1 486 81.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 3.7e-229 798.1 488 80.7
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 6.3e-229 797.3 489 81.2
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 3.8e-226 788.1 485 79.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.9e-225 785.8 458 82.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.9e-225 785.8 486 79.8
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 2.5e-225 785.4 486 80.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.2e-224 783.1 486 79.4
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 2.7e-224 781.9 489 79.1
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 8.0e-224 780.4 490 79.4
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 3.0e-223 778.5 492 79.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.0e-223 778.5 488 79.1
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 4.4e-222 774.6 500 76.6
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 4.4e-222 774.6 491 78.6
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 4.4e-222 774.6 488 79.7
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 4.4e-222 774.6 485 77.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 2.2e-221 772.3 497 77.9
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 3.7e-221 771.5 491 77.8
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 4.8e-221 771.2 484 78.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.8e-221 771.2 489 77.5
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.8e-220 769.2 431 84.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 3.1e-220 768.5 486 78.0
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 5.4e-220 767.7 486 78.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.2e-219 766.5 486 78.6
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.2e-219 766.5 486 77.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.0e-219 765.8 523 74.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 2.7e-219 765.4 486 77.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.7e-218 762.7 486 77.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.3e-218 762.3 484 78.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.9e-218 761.9 488 77.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.5e-218 760.8 494 77.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.9e-217 759.2 496 77.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 4.2e-217 758.1 455 79.1
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.2e-216 756.5 488 75.4
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.6e-216 756.1 483 78.1
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 2.8e-216 755.4 526 72.1
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 8.0e-216 753.8 485 77.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.0e-215 753.4 485 77.1
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 6.8e-215 750.7 486 75.9
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.2e-214 750.0 491 75.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.2e-214 750.0 485 77.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.5e-214 749.6 484 75.6
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.5e-214 749.6 464 80.0
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 2.6e-214 748.8 484 76.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 7.5e-214 747.3 484 76.2
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.3e-213 746.5 448 78.8
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.3e-213 746.5 436 81.2
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.7e-213 746.1 424 82.8
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.3e-213 743.8 489 76.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.4e-212 741.1 484 76.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.2e-211 740.0 425 83.3
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.5e-211 738.4 486 74.1
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.5e-211 738.4 484 74.4
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-210 736.9 460 76.3
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.3e-210 736.5 486 74.3
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 2.3e-210 735.7 486 74.3
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.9e-210 735.3 486 74.3
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.9e-210 735.3 486 74.3
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 6.6e-210 734.2 478 76.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 7.3e-209 730.7 423 80.9
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.1e-208 729.2 487 73.7
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 2.1e-208 729.2 436 80.3
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.1e-208 729.2 488 75.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 3.6e-208 728.4 486 74.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 6.1e-208 727.6 490 72.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 6.1e-208 727.6 485 73.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 6.1e-208 727.6 485 73.6
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.0e-207 726.9 466 76.6
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.4e-207 726.5 488 74.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.3e-207 725.7 487 72.9
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.0e-207 725.3 425 81.6
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.2e-206 723.4 487 73.3
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.0e-206 722.6 487 73.7
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.9e-205 718.8 489 72.8
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.8e-204 716.1 448 77.7
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 3.2e-204 715.3 444 78.4
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-203 713.4 401 84.0
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.9e-202 708.4 442 79.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.1e-200 702.6 433 77.4
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.3e-197 693.3 541 67.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.1e-196 688.3 401 81.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 9.2e-196 687.2 377 87.0
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.7e-195 685.6 404 80.7
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.7e-194 682.9 459 76.9
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.3e-194 682.6 462 71.6
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 5.0e-194 681.4 465 72.0
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 3.3e-193 678.7 423 76.6
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 3.9e-186 655.2 490 70.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 7.6e-182 641.0 377 79.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.8e-181 638.6 410 74.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 5.1e-178 628.2 442 68.1
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 8.7e-178 627.5 476 67.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 4.7e-176 621.7 340 86.5
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 3.1e-175 619.0 498 66.7
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 4.0e-175 618.6 393 75.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.9e-172 609.8 468 63.0
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.5e-169 600.1 389 74.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 3.3e-169 599.0 487 63.4
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.1e-167 592.4 377 75.3
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 9.3e-164 580.9 503 58.1
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.0e-162 577.4 404 69.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-156 556.2 326 83.7
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 5.1e-154 548.5 380 71.8
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 5.3e-151 538.5 457 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 3.1e-143 512.7 455 55.6
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.7e-131 473.0 256 85.5
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.8e-122 443.7 296 72.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.8e-122 443.7 296 72.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.5e-116 422.2 348 63.2
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 8.8e-114 414.8 391 53.7
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 7.0e-111 405.2 294 67.0
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.3e-106 390.2 270 71.1
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 4.0e-106 389.4 284 66.5
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 6.8e-106 388.7 264 71.6
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.2e-104 383.6 294 66.0
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.9e-88 329.3 386 45.1
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.6e-86 322.8 207 73.9
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 5.2e-82 309.3 235 70.6
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 5.1e-77 292.7 335 44.5
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.3e-72 278.1 250 58.4
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.1e-66 258.5 580 31.7
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.1e-50 203.8 460 32.4
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 9.9e-49 198.7 110 84.5
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.3e-42 176.4 112 74.1
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.3e-42 176.4 151 64.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.0e-32 145.6 85 81.2
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.3e-32 145.2 82 76.8
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.0e-21 107.5 74 71.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.5e-20 105.1 58 72.4
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.5e-20 104.4 92 56.5
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.3e-19 102.1 69 68.1
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.3e-19 102.1 95 55.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.3e-19 102.1 69 68.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.7e-19 101.7 69 68.1
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.2e-19 101.3 68 69.1
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 68.1
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.8e-19 100.9 96 53.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.4e-18 98.6 69 65.2
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.8e-18 98.2 68 66.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.4e-18 97.8 69 65.2
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.5e-17 93.6 53 77.4
QL02p080475 Quercus lobata HOM05D019593 ORTHO05D014239 7.7e-17 92.8 54 92.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.6e-14 85.1 69 65.2
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 6.1e-14 83.2 64 71.9
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 4.4e-12 77.0 87 49.4
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 3.1e-10 70.9 60 63.3
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.2e-09 68.9 45 75.6
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.0e-08 65.9 52 63.5


User provided reference genes

Program Settings