Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.8e-108 396.0 210 100.0
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 5.1e-74 281.6 217 76.5
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 2.4e-44 183.0 210 57.6
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 2.2e-37 159.8 213 53.5
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.9e-36 156.8 189 52.9
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 3.5e-35 152.5 93 86.0
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 2.1e-32 143.3 191 49.2
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 2.1e-32 143.3 212 50.5
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.8e-32 142.9 191 49.2
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.8e-32 142.1 191 48.7
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 6.2e-32 141.7 188 48.9
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.2e-32 141.4 192 48.4
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.8e-31 140.2 198 44.9
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.1e-31 139.0 191 48.7
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 5.3e-31 138.7 195 46.7
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.6e-30 136.3 194 44.3
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 3.4e-30 136.0 186 47.3
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.0e-29 132.1 192 45.3
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.4e-28 130.6 208 42.8
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 1.9e-28 130.2 202 42.6
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 1.2e-27 127.5 219 42.9
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.6e-27 127.1 204 42.2
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 2.1e-27 126.7 226 43.4
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 6.1e-27 125.2 216 45.4
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.3e-26 124.0 207 41.1
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 8.7e-26 121.3 187 44.4
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.5e-25 120.6 224 39.7
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.5e-25 119.8 210 42.4
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 4.3e-25 119.0 210 38.6
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 7.4e-25 118.2 188 43.6
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.3e-24 117.5 202 44.6
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.6e-24 117.1 195 43.1
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.2e-24 116.7 197 40.6
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 2.8e-24 116.3 104 52.9
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.8e-24 116.3 92 62.0
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 3.7e-24 115.9 190 40.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.7e-24 115.9 83 66.3
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.8e-24 115.5 217 41.9
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.8e-24 115.5 217 41.9
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 4.8e-24 115.5 87 62.1
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 6.3e-24 115.2 95 64.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.3e-24 115.2 160 43.8
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.4e-23 114.0 200 40.5
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.4e-23 114.0 94 59.6
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.8e-23 113.6 90 62.2
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 5.3e-23 112.1 186 38.2
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 5.3e-23 112.1 95 60.0
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 6.9e-23 111.7 195 44.1
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 9.0e-23 111.3 193 41.5
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 1.5e-22 110.5 85 64.7
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.0e-22 110.2 210 37.6
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.6e-22 109.8 110 51.8
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 2.6e-22 109.8 118 55.1
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.4e-22 109.4 98 56.1
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.9e-22 108.6 204 38.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.3e-21 107.5 85 62.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.7e-21 107.1 110 53.6
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.7e-21 107.1 213 39.4
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.2e-21 106.7 98 58.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 2.2e-21 106.7 212 39.6
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 3.8e-21 105.9 187 43.9
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 5.0e-21 105.5 88 62.5
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 6.5e-21 105.1 189 41.8
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 8.5e-21 104.8 189 40.2
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 8.5e-21 104.8 212 38.2
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.9e-20 103.6 199 41.2
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.5e-20 103.2 197 41.1
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.5e-20 103.2 95 55.8
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-20 103.2 71 67.6
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.5e-20 103.2 185 39.5
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.2e-20 102.8 214 37.9
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 5.5e-20 102.1 83 60.2
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 5.5e-20 102.1 184 37.5
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 5.5e-20 102.1 186 36.6
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 7.2e-20 101.7 187 39.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.4e-20 101.3 95 54.7
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 9.4e-20 101.3 194 40.7
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.2e-19 100.9 193 39.4
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.6e-19 100.5 215 39.5
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.6e-19 99.4 185 37.8
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 6.1e-19 98.6 92 52.2
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 7.9e-19 98.2 154 38.3
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 1.0e-18 97.8 189 36.5
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.4e-18 97.4 192 37.5
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.4e-18 97.4 189 36.5
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.4e-18 97.4 189 36.5
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.8e-18 97.1 132 45.5
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.3e-18 96.7 197 38.1
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.9e-18 95.9 190 40.0
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 5.1e-18 95.5 190 37.4
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 5.1e-18 95.5 190 37.4
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 5.1e-18 95.5 193 36.8
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 6.7e-18 95.1 91 56.0
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 8.8e-18 94.7 162 35.8
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.5e-17 94.0 187 36.9
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 4.3e-17 92.4 187 38.5
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.8e-16 89.7 188 37.8
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.8e-16 89.7 124 44.4
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 2.8e-16 89.7 189 37.0
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 4.8e-16 89.0 91 48.4
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 8.2e-16 88.2 200 42.5
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.1e-15 87.8 191 37.2
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.1e-15 87.8 189 35.4
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.1e-15 86.3 189 37.0
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 5.3e-15 85.5 152 42.8
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.5e-14 84.0 208 36.1
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.0e-14 83.6 104 45.2
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 2.6e-14 83.2 110 43.6
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 3.4e-14 82.8 193 36.3
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 5.9e-14 82.0 73 60.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 2.2e-13 80.1 213 31.0
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.9e-13 79.7 106 44.3
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 6.5e-13 78.6 82 52.4
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 8.5e-13 78.2 166 33.1
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.9e-12 77.0 89 46.1
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.9e-12 77.0 132 36.4
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 5.5e-12 75.5 190 35.3
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.5e-12 75.5 141 36.2
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 5.5e-12 75.5 89 49.4
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 7.2e-12 75.1 141 36.2
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.6e-11 73.9 171 33.9
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 2.7e-11 73.2 123 40.7
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 3.6e-11 72.8 55 61.8
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.4e-10 70.9 161 36.0
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.3e-10 70.1 195 34.4
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 2.3e-10 70.1 84 45.2
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 2.3e-10 70.1 97 44.3
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.5e-09 67.4 113 35.4
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 2.0e-09 67.0 87 43.7
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 5.7e-09 65.5 217 30.9
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 7.4e-09 65.1 88 40.9
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 9.7e-09 64.7 89 42.7
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 9.7e-09 64.7 92 37.0
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 1.3e-08 64.3 229 30.6
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.3e-08 64.3 82 41.5
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 6.3e-08 62.0 85 42.4
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 8.2e-08 61.6 197 34.0
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 5.3e-07 58.9 178 31.5
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 7.0e-07 58.5 123 36.6
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.2e-06 57.8 141 36.2
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.2e-06 57.8 151 33.8
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 2.6e-06 56.6 91 35.2
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 4.5e-06 55.8 80 37.5
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.9e-06 55.5 209 31.1


User provided reference genes

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