Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p078023 Quercus lobata HOM05D024104 ORTHO05D020982 3.6e-70 268.1 131 100.0
QL02p077924 Quercus lobata HOM05D000938 ORTHO05D003373 3.3e-55 218.4 128 85.9
QL04p034944 Quercus lobata HOM05D000938 ORTHO05D003373 6.4e-43 177.6 124 75.0
QL02p078107 Quercus lobata HOM05D000938 ORTHO05D003373 2.4e-37 159.1 125 64.8
QL93p0205_0258 Quercus lobata HOM05D000047 ORTHO05D000044 2.4e-37 159.1 125 64.8
QL03p072640 Quercus lobata HOM05D000938 ORTHO05D020982 6.0e-33 144.4 136 58.1
QL05p000021 Quercus lobata HOM05D000938 ORTHO05D003373 1.7e-32 142.9 123 61.0
QL04p034967 Quercus lobata HOM05D024104 ORTHO05D020982 3.0e-32 142.1 130 59.2
QL03p072776 Quercus lobata HOM05D024104 ORTHO05D020982 9.6e-31 137.1 137 57.7
QL93p0205_0194 Quercus lobata HOM05D000938 ORTHO05D003373 4.0e-29 131.7 124 56.5
QL02p078133 Quercus lobata HOM05D000938 ORTHO05D003373 2.6e-28 129.0 124 54.8
QL93p0205_0187 Quercus lobata HOM05D000938 ORTHO05D003373 2.6e-28 129.0 124 54.8
Haze_14641 Corylus avellana HOM05D000938 ORTHO05D003373 8.4e-27 124.0 116 53.4
Haze_19126 Corylus avellana HOM05D000938 ORTHO05D003373 3.2e-26 122.1 125 52.8
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 5.5e-26 121.3 122 52.5
CiPaw.03G034900 Carya illinoinensis HOM05D000938 ORTHO05D003373 3.3e-23 112.1 123 48.8
Haze_22791 Corylus avellana HOM05D000011 ORTHO05D000018 7.4e-23 110.9 114 52.6
CiPaw.03G034800 Carya illinoinensis HOM05D000938 ORTHO05D003373 3.1e-21 105.5 123 46.3
QL02p078120 Quercus lobata HOM05D000030 ORTHO05D000009 4.5e-20 101.7 124 50.0
QL93p0205_0202 Quercus lobata HOM05D000938 ORTHO05D003373 8.4e-19 97.4 124 50.0
QL02p077943 Quercus lobata HOM05D024104 ORTHO05D020982 3.2e-18 95.5 67 70.1
QL10p062364 Quercus lobata HOM05D024104 ORTHO05D020982 3.2e-18 95.5 67 70.1
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.5e-17 92.0 114 45.6
Potri.001G290600 Populus trichocarpa HOM05D000938 ORTHO05D003373 1.8e-16 89.7 120 45.8
Atru.chr8.2419 Acer truncatum HOM05D000938 ORTHO05D003373 6.7e-16 87.8 112 44.6
Potri.019G007227 Populus trichocarpa HOM05D000938 ORTHO05D003373 3.3e-15 85.5 122 42.6
Potri.009G086100 Populus trichocarpa HOM05D000938 ORTHO05D003373 5.7e-15 84.7 119 45.4
TAR629G3034 Trochodendron aralioides HOM05D000938 ORTHO05D003373 2.1e-14 82.8 121 41.3
PGR142G3586 Punica granatum HOM05D000938 ORTHO05D003373 3.7e-14 82.0 116 44.8
TWI36G0225 Tripterygium wilfordii HOM05D000938 ORTHO05D003373 6.3e-14 81.3 119 42.9
Haze_05423 Corylus avellana HOM05D000011 ORTHO05D003373 1.1e-13 80.5 76 56.6
Oeu029382.1 Olea europaea HOM05D000938 ORTHO05D003373 1.1e-13 80.5 121 42.1
Manes.17G118200 Manihot esculenta HOM05D000938 ORTHO05D003373 2.4e-13 79.3 119 40.3
PGR142G3985 Punica granatum HOM05D000938 ORTHO05D003373 3.1e-13 79.0 118 42.4
Potri.019G005256 Populus trichocarpa HOM05D000938 ORTHO05D003373 6.9e-13 77.8 122 39.3
vmacro05793 Vaccinium macrocarpon HOM05D000938 ORTHO05D003373 1.2e-12 77.0 124 40.3
Gorai.001G259500 Gossypium raimondii HOM05D000938 ORTHO05D003373 2.0e-12 76.3 120 38.3
Gohir.A07G218000 Gossypium hirsutum HOM05D000938 ORTHO05D003373 3.4e-12 75.5 120 38.3
Rhsim10G0027700 Rhododendron simsii HOM05D000938 ORTHO05D003373 3.4e-12 75.5 123 38.2
Rhsim10G0029000 Rhododendron simsii HOM05D000938 ORTHO05D003373 4.5e-12 75.1 120 39.2
Eucgr.I01845 Eucalyptus grandis HOM05D000938 ORTHO05D003373 7.6e-12 74.3 114 43.0
FvH4_6g50160 Fragaria vesca HOM05D000938 ORTHO05D003373 7.6e-12 74.3 118 44.9
Nitab4.5_0011847g0010 Nicotiana tabacum HOM05D000938 ORTHO05D003373 1.0e-11 73.9 114 37.7
Ciclev10011372m.g Citrus clementina HOM05D000938 ORTHO05D003373 1.3e-11 73.6 120 40.0
FAN05G0442 Fragaria x ananassa HOM05D000938 ORTHO05D003373 1.3e-11 73.6 118 43.2
FAN14G0689 Fragaria x ananassa HOM05D000938 ORTHO05D003373 2.2e-11 72.8 118 44.1
PGR142G0819 Punica granatum HOM05D000938 ORTHO05D003373 2.2e-11 72.8 116 42.2
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.9e-11 72.4 117 43.6
Cc07_g02580 Coffea canephora HOM05D000938 ORTHO05D003373 3.8e-11 72.0 124 37.9
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 3.8e-11 72.0 118 37.3
Nitab4.5_0005797g0040 Nicotiana tabacum HOM05D000938 ORTHO05D003373 6.5e-11 71.2 117 36.8
RcHm_v2.0_Chr2g0170411 Rosa chinensis HOM05D000938 ORTHO05D003373 6.5e-11 71.2 112 45.5
Eucgr.I01838 Eucalyptus grandis HOM05D000938 ORTHO05D003373 8.4e-11 70.9 114 42.1
Eucgr.I01868 Eucalyptus grandis HOM05D000938 ORTHO05D003373 8.4e-11 70.9 117 42.7
Eucgr.I01840 Eucalyptus grandis HOM05D000938 ORTHO05D003373 1.1e-10 70.5 115 40.9
FvH4_2g18461 Fragaria vesca HOM05D000938 ORTHO05D003373 1.1e-10 70.5 118 43.2
Eucgr.I01837 Eucalyptus grandis HOM05D000938 ORTHO05D003373 1.4e-10 70.1 115 40.9
Thecc.04G003800 Theobroma cacao HOM05D000938 ORTHO05D003373 1.4e-10 70.1 115 37.4
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 2.5e-10 69.3 113 39.8
FAN24G3389 Fragaria x ananassa HOM05D000186 ORTHO05D002329 2.5e-10 69.3 112 42.9
RcHm_v2.0_Chr7g0219541 Rosa chinensis HOM05D000938 ORTHO05D003373 2.5e-10 69.3 117 42.7
RcHm_v2.0_Chr7g0219521 Rosa chinensis HOM05D000938 ORTHO05D003373 7.2e-10 67.8 117 41.9
Prupe.2G019500 Prunus persica HOM05D000938 ORTHO05D003373 9.3e-10 67.4 114 38.6
Eucgr.I01864 Eucalyptus grandis HOM05D000938 ORTHO05D003373 1.2e-09 67.0 114 41.2
FvH4_6g50162 Fragaria vesca HOM05D000938 ORTHO05D003373 1.2e-09 67.0 117 39.3
CSS0029236 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D003373 1.6e-09 66.6 118 36.4
RcHm_v2.0_Chr2g0170561 Rosa chinensis HOM05D000938 ORTHO05D003373 2.7e-09 65.9 119 39.5
FAN27G1657 Fragaria x ananassa HOM05D000186 ORTHO05D002329 3.5e-09 65.5 112 42.0
Peaxi162Scf00195g00127 Petunia axillaris HOM05D000938 ORTHO05D003373 3.5e-09 65.5 114 39.5
Medtr3g467350 Medicago truncatula HOM05D000938 ORTHO05D003373 4.6e-09 65.1 116 37.9
Medtr6g008055 Medicago truncatula HOM05D000938 ORTHO05D003373 4.6e-09 65.1 121 38.0
Prupe.3G279300 Prunus persica HOM05D000938 ORTHO05D003373 1.0e-08 63.9 114 36.8
RcHm_v2.0_Chr6g0283961 Rosa chinensis HOM05D000938 ORTHO05D003373 1.0e-08 63.9 116 44.0
Nitab4.5_0001727g0040 Nicotiana tabacum HOM05D000938 ORTHO05D003373 1.8e-08 63.2 117 36.8
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.9e-08 62.0 111 38.7
Lj2g0024933 Lotus japonicus HOM05D000938 ORTHO05D003373 3.9e-08 62.0 123 43.1
Nitab4.5_0023218g0010 Nicotiana tabacum HOM05D000938 ORTHO05D003373 3.9e-08 62.0 115 37.4
Peaxi162Scf00368g00121 Petunia axillaris HOM05D000938 ORTHO05D003373 3.9e-08 62.0 123 35.8
MELO3C009925.2 Cucumis melo HOM05D000938 ORTHO05D003373 5.1e-08 61.6 121 33.9
FAN28G1836 Fragaria x ananassa HOM05D015850 ORTHO05D017037 6.7e-08 61.2 117 38.5
Nn3g16990 Nelumbo nucifera HOM05D000938 ORTHO05D003373 8.7e-08 60.8 121 34.7
RcHm_v2.0_Chr6g0283981 Rosa chinensis HOM05D000938 ORTHO05D003373 8.7e-08 60.8 118 40.7
Sopen02g016770 Solanum pennellii HOM05D000938 ORTHO05D003373 8.7e-08 60.8 119 35.3
PGSC0003DMG400021206 Solanum tuberosum HOM05D000938 ORTHO05D003373 8.7e-08 60.8 117 38.5
CsaV3_3G042050 Cucumis sativus L. HOM05D000938 ORTHO05D003373 1.1e-07 60.5 122 36.1
Lj2g0010048 Lotus japonicus HOM05D000938 ORTHO05D003373 1.1e-07 60.5 125 38.4
Solyc02g067660.4 Solanum lycopersicum HOM05D000938 ORTHO05D003373 1.9e-07 59.7 119 35.3
CAN.G1649.3 Capsicum annuum HOM05D000938 ORTHO05D003373 2.5e-07 59.3 121 34.7
GSVIVG01032532001 Vitis vinifera HOM05D000938 ORTHO05D003373 2.5e-07 59.3 119 33.6
TPR.G35844 Trifolium pratense HOM05D000938 ORTHO05D003373 4.3e-07 58.5 116 37.9
Glyma.19G013200 Glycine max HOM05D000938 ORTHO05D003373 5.7e-07 58.2 119 37.0
Sopen02g018550 Solanum pennellii HOM05D000938 ORTHO05D003373 5.7e-07 58.2 117 37.6
ClCG10G014530 Citrullus lanatus HOM05D000938 ORTHO05D003373 7.4e-07 57.8 122 35.2
QL93p0205_0239 Quercus lobata HOM05D000938 ORTHO05D020982 9.7e-07 57.4 113 35.4
TPR.G35059 Trifolium pratense HOM05D000938 ORTHO05D003373 1.3e-06 57.0 118 33.9
GSVIVG01032530001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.3e-06 57.0 120 33.3
GSVIVG01032533001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.3e-06 57.0 118 34.7
GSVIVG01032534001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.3e-06 57.0 120 33.3
GSVIVG01032536001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.3e-06 57.0 119 32.8
Duzib264G0890 Durio zibethinus HOM05D000938 ORTHO05D003373 1.6e-06 56.6 101 33.7
Medtr0286s0050 Medicago truncatula HOM05D000938 ORTHO05D003373 2.2e-06 56.2 113 37.2
Medtr6g007975 Medicago truncatula HOM05D000938 ORTHO05D003373 2.2e-06 56.2 113 37.2
Medtr6g008015 Medicago truncatula HOM05D000938 ORTHO05D003373 2.2e-06 56.2 113 37.2
THA.LOC104821072 Tarenaya hassleriana HOM05D000938 ORTHO05D003373 2.2e-06 56.2 117 35.0
A03p06860 Brassica napus HOM05D000938 ORTHO05D003373 2.8e-06 55.8 110 32.7
PGSC0003DMG400006945 Solanum tuberosum HOM05D000938 ORTHO05D003373 2.8e-06 55.8 121 33.1
Glyma.13G069000 Glycine max HOM05D000938 ORTHO05D003373 3.7e-06 55.5 117 35.0
MD01G1017800 Malus domestica HOM05D000938 ORTHO05D003373 4.8e-06 55.1 109 33.9
Sp6g29120 Schrenkiella parvula HOM05D000938 ORTHO05D003373 4.8e-06 55.1 110 29.1


User provided reference genes

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