Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p077872 Quercus lobata HOM05D000270 ORTHO05D016302 2.2e-58 228.8 119 100.0
QL02p077746 Quercus lobata HOM05D000270 ORTHO05D016302 1.8e-28 129.4 172 45.9
QL02p077861 Quercus lobata HOM05D000270 ORTHO05D016302 5.1e-23 111.3 75 62.7
CiPaw.03G035100 Carya illinoinensis HOM05D000270 ORTHO05D000163 1.4e-15 86.7 154 39.0
Eucgr.J02174 Eucalyptus grandis HOM05D000270 ORTHO05D000163 6.9e-12 74.3 139 36.7
FAN05G2150 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.2e-11 73.6 190 30.5
Prupe.3G279500 Prunus persica HOM05D000270 ORTHO05D016302 2.0e-11 72.8 145 36.6
CDE07G0783 Ceratophyllum demersum HOM05D000270 ORTHO05D000163 1.0e-10 70.5 130 35.4
Cfa007464 Carpinus fangiana HOM05D000270 ORTHO05D000163 2.2e-10 69.3 68 45.6
Manes.17G119301 Manihot esculenta HOM05D000270 ORTHO05D000163 2.9e-10 68.9 76 43.4
MD09G1038300 Malus domestica HOM05D000270 ORTHO05D016302 6.5e-10 67.8 156 32.7
MD17G1039200 Malus domestica HOM05D000270 ORTHO05D000163 6.5e-10 67.8 176 30.1
FAN14G0834 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.1e-09 67.0 86 40.7
FAN14G3799 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.1e-09 67.0 86 40.7
FvH4_6g50260 Fragaria vesca HOM05D000270 ORTHO05D000163 1.4e-09 66.6 181 29.8
FAN02G4170 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.4e-09 66.6 186 30.1
MD17G1039400 Malus domestica HOM05D000270 ORTHO05D016419 1.4e-09 66.6 166 30.7
FAN09G1638 Fragaria x ananassa HOM05D000270 ORTHO05D000163 1.9e-09 66.2 181 29.8
Aqoxy3G00901 Aquilegia oxysepala HOM05D000270 ORTHO05D000163 7.2e-09 64.3 128 35.2
ClCG10G014510 Citrullus lanatus HOM05D000270 ORTHO05D000163 7.2e-09 64.3 72 43.1
FvH4_6g50190 Fragaria vesca HOM05D022604 ORTHO05D016302 1.2e-08 63.5 209 27.8
Glyma.13G069900 Glycine max HOM05D000270 ORTHO05D000163 1.2e-08 63.5 71 40.8
DCAR_013960 Daucus carota HOM05D000270 ORTHO05D000163 1.6e-08 63.2 136 34.6
FAN09G1047 Fragaria x ananassa HOM05D000270 ORTHO05D016302 1.6e-08 63.2 115 33.0
RcHm_v2.0_Chr2g0170521 Rosa chinensis HOM05D000270 ORTHO05D000163 1.6e-08 63.2 63 44.4
Glyma.19G013000 Glycine max HOM05D000270 ORTHO05D000163 2.1e-08 62.8 71 39.4
CiPaw.04G022700 Carya illinoinensis HOM05D000270 ORTHO05D000163 2.7e-08 62.4 179 30.2
AUR62032096 Chenopodium quinoa HOM05D000270 ORTHO05D000163 2.7e-08 62.4 80 40.0
Ca_04221_v3 Cicer arietinum L. HOM05D000270 ORTHO05D000163 2.7e-08 62.4 75 40.0
MELO3C009926.2 Cucumis melo HOM05D000270 ORTHO05D000163 2.7e-08 62.4 72 41.7
FAN14G3230 Fragaria x ananassa HOM05D022604 ORTHO05D016302 2.7e-08 62.4 76 38.2
Lalb_Chr21g0319311 Lupinus albus HOM05D000270 ORTHO05D000163 2.7e-08 62.4 158 32.9
CSS0035575 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 6.1e-08 61.2 61 44.3
Potri.001G350600 Populus trichocarpa HOM05D000270 ORTHO05D000163 6.1e-08 61.2 69 42.0
RcHm_v2.0_Chr2g0170451 Rosa chinensis HOM05D000270 ORTHO05D016302 6.1e-08 61.2 189 26.5
Sabra16G0230100 Salix brachista HOM05D000270 ORTHO05D000163 7.9e-08 60.8 69 40.6
Sed0019149 Sechium edule HOM05D000270 ORTHO05D000163 7.9e-08 60.8 76 39.5
Ah.10g033540 Amaranthus hybridus HOM05D001690 ORTHO05D002627 1.4e-07 60.1 75 40.0
Cpa.g.sc14.90 Carica papaya HOM05D000270 ORTHO05D000163 1.4e-07 60.1 69 40.6
Lj2g0015846 Lotus japonicus HOM05D000270 ORTHO05D000163 1.4e-07 60.1 63 42.9
GSVIVG01032528001 Vitis vinifera HOM05D000270 ORTHO05D000163 1.4e-07 60.1 70 40.0
Lalb_Chr06g0176431 Lupinus albus HOM05D000270 ORTHO05D000163 1.8e-07 59.7 146 32.9
Phvul.004G019900 Phaseolus vulgaris HOM05D000270 ORTHO05D000163 1.8e-07 59.7 65 41.5
TPR.G31459 Trifolium pratense HOM05D000270 ORTHO05D000163 1.8e-07 59.7 69 39.1
CSS0011434 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 2.3e-07 59.3 124 35.5
CSS0019366 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 2.3e-07 59.3 124 35.5
VMungo0464G0102 Vigna mungo HOM05D000270 ORTHO05D000163 2.3e-07 59.3 63 42.9
EL10Ac2g03379 Beta vulgaris HOM05D000270 ORTHO05D000163 3.9e-07 58.5 73 39.7
arahy.Tifrunner.gnm1.ann1.V89RV5 Arachis hypogaea HOM05D000270 ORTHO05D000163 5.1e-07 58.2 69 49.3
DCAR_011197 Daucus carota HOM05D000270 ORTHO05D000163 5.1e-07 58.2 64 43.8
Actinidia06040 Actinidia chinensis HOM05D000270 ORTHO05D000163 6.7e-07 57.8 61 44.3
Ciclev10012786m.g Citrus clementina HOM05D000270 ORTHO05D000163 6.7e-07 57.8 80 37.5
Eucgr.I01835 Eucalyptus grandis HOM05D000270 ORTHO05D000163 6.7e-07 57.8 61 41.0
QL02p077884 Quercus lobata HOM05D000270 ORTHO05D000163 6.7e-07 57.8 170 35.3
Rhsim12G0124600 Rhododendron simsii HOM05D000270 ORTHO05D000163 6.7e-07 57.8 64 40.6
Aqoxy3G03088 Aquilegia oxysepala HOM05D000270 ORTHO05D000163 8.8e-07 57.4 133 33.8
CAN.G853.8 Capsicum annuum HOM05D000270 ORTHO05D000163 8.8e-07 57.4 72 41.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 8.8e-07 57.4 65 40.0
MD09G1038100 Malus domestica HOM05D000270 ORTHO05D000163 8.8e-07 57.4 66 39.4
Peaxi162Scf00017g02520 Petunia axillaris HOM05D000270 ORTHO05D000163 1.1e-06 57.0 106 32.1
PGR142G2575 Punica granatum HOM05D000270 ORTHO05D000163 1.1e-06 57.0 61 42.6
CsaV3_3G042060 Cucumis sativus L. HOM05D000270 ORTHO05D000163 1.5e-06 56.6 63 41.3
Phvul.003G055500 Phaseolus vulgaris HOM05D000270 ORTHO05D000163 1.5e-06 56.6 71 38.0
Prupe.3G279800 Prunus persica HOM05D000270 ORTHO05D000163 1.5e-06 56.6 61 41.0
ATR1101G082 Amborella trichopoda HOM05D000270 ORTHO05D000163 2.0e-06 56.2 113 35.4
FAN02G1240 Fragaria x ananassa HOM05D022604 ORTHO05D016302 2.0e-06 56.2 66 36.4
Ciclev10033115m.g Citrus clementina HOM05D000270 ORTHO05D000163 2.6e-06 55.8 67 37.3
Nitab4.5_0004348g0050 Nicotiana tabacum HOM05D000270 ORTHO05D000163 2.6e-06 55.8 159 29.6
Prupe.5G178400 Prunus persica HOM05D000270 ORTHO05D000163 2.6e-06 55.8 61 39.3
arahy.Tifrunner.gnm1.ann1.RUJ0QA Arachis hypogaea HOM05D000270 ORTHO05D000163 3.3e-06 55.5 65 50.8
ECA246G0933 Erigeron canadensis HOM05D000270 ORTHO05D007107 3.3e-06 55.5 86 33.7
PGR102G1695 Punica granatum HOM05D000270 ORTHO05D000163 3.3e-06 55.5 61 41.0
Solyc03g113910.3 Solanum lycopersicum HOM05D000270 ORTHO05D000163 3.3e-06 55.5 61 42.6
Sopen03g032960 Solanum pennellii HOM05D000270 ORTHO05D000163 3.3e-06 55.5 61 42.6
Thecc.04G004100 Theobroma cacao HOM05D000270 ORTHO05D000163 3.3e-06 55.5 65 40.0
CSS0003185 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 4.4e-06 55.1 61 39.3
CSS0005476 Camellia sinensis var. sinensis HOM05D000270 ORTHO05D000163 4.4e-06 55.1 61 39.3
Dinv20694 Davidia involucrata HOM05D000270 ORTHO05D000163 5.7e-06 54.7 121 32.2
Medtr6g007897 Medicago truncatula HOM05D000270 ORTHO05D000163 5.7e-06 54.7 71 38.0
Nn4g22897 Nelumbo nucifera HOM05D000270 ORTHO05D000163 5.7e-06 54.7 75 36.0
Nitab4.5_0004753g0060 Nicotiana tabacum HOM05D000270 ORTHO05D000163 5.7e-06 54.7 68 38.2
Sc20g0002770 Simmondsia chinensis HOM05D000270 ORTHO05D000163 5.7e-06 54.7 61 41.0
vmacro16282 Vaccinium macrocarpon HOM05D000270 ORTHO05D000163 5.7e-06 54.7 61 39.3
MSTRG.624 Avicennia marina HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 39.3
Dinv09176 Davidia involucrata HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 37.7
Duzib084G1167 Durio zibethinus HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 37.7
Duzib205G0482 Durio zibethinus HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 37.7
GSVIVG01007817001 Vitis vinifera HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 39.3
GSVIVG01020178001 Vitis vinifera HOM05D000270 ORTHO05D000163 7.4e-06 54.3 61 41.0
arahy.Tifrunner.gnm1.ann1.FK6HB9 Arachis hypogaea HOM05D000270 ORTHO05D000163 9.7e-06 53.9 61 39.3
Eucgr.B03366 Eucalyptus grandis HOM05D000270 ORTHO05D000163 9.7e-06 53.9 114 33.3
Manes.01G196400 Manihot esculenta HOM05D000270 ORTHO05D000163 9.7e-06 53.9 61 41.0


User provided reference genes

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