Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 5.1e-105 384.4 193 100.0
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.8e-57 226.5 190 72.6
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 5.3e-54 214.9 195 68.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 7.2e-51 204.5 189 67.7
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.8e-49 199.9 185 62.2
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.8e-47 192.6 185 60.5
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 1.3e-44 183.7 189 62.4
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 3.2e-43 179.1 198 56.1
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 2.1e-42 176.4 192 60.4
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.1e-42 176.4 194 56.7
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 6.1e-42 174.9 205 56.6
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.8e-41 173.3 188 55.3
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 2.0e-40 169.9 194 55.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 5.7e-40 168.3 184 56.0
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 7.5e-40 167.9 194 57.2
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 5.4e-38 161.8 191 48.7
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.3e-36 157.1 169 54.4
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.7e-36 156.8 168 55.4
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 2.3e-36 156.4 195 51.3
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 2.9e-36 156.0 190 52.6
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 6.6e-36 154.8 172 52.9
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 2.5e-35 152.9 168 53.0
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 4.2e-35 152.1 188 49.5
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.6e-34 150.2 190 54.2
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.1e-34 149.8 171 54.4
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 2.8e-34 149.4 192 50.0
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 4.7e-34 148.7 191 49.2
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.0e-34 147.9 185 48.1
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.0e-33 147.5 191 51.8
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.4e-33 147.1 164 53.0
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.4e-33 147.1 164 53.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.8e-33 146.7 163 55.8
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.8e-33 146.7 191 51.3
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 6.8e-33 144.8 213 45.5
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 8.9e-33 144.4 170 51.8
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.5e-32 143.7 163 52.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.0e-32 143.3 213 49.3
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 2.0e-32 143.3 193 46.6
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 2.0e-32 143.3 193 49.2
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 1.3e-31 140.6 213 48.8
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.7e-31 140.2 213 46.5
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 2.8e-31 139.4 210 48.6
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.9e-31 138.7 194 45.4
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 4.9e-31 138.7 224 43.3
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 9.2e-30 134.4 193 45.6
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.6e-29 133.7 224 42.9
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.6e-29 133.7 168 47.0
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.6e-29 133.7 166 51.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 5.9e-29 131.7 166 50.6
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 7.8e-29 131.3 210 45.2
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 7.8e-29 131.3 173 47.4
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 2.3e-28 129.8 186 45.7
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.9e-28 129.4 172 44.8
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.9e-28 129.4 182 45.6
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 2.9e-28 129.4 190 44.7
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 6.6e-28 128.3 184 44.6
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.5e-27 127.1 192 46.9
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.5e-27 127.1 182 45.1
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.5e-27 127.1 164 45.1
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 2.5e-27 126.3 189 45.5
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 2.5e-27 126.3 234 39.3
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.3e-27 125.9 227 40.5
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 3.3e-27 125.9 167 46.7
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 4.3e-27 125.6 179 43.6
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 5.6e-27 125.2 193 45.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 9.5e-27 124.4 189 48.7
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 9.5e-27 124.4 189 48.7
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 9.5e-27 124.4 173 45.7
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 9.5e-27 124.4 184 42.4
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 9.5e-27 124.4 220 39.1
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.2e-26 124.0 178 44.4
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.6e-26 123.6 159 44.7
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.6e-26 123.6 178 43.3
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-26 123.2 186 46.8
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 2.1e-26 123.2 186 46.8
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.1e-26 123.2 182 45.1
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 2.8e-26 122.9 165 47.9
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 6.1e-26 121.7 186 46.2
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 6.1e-26 121.7 165 46.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.1e-26 121.7 190 42.1
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 8.0e-26 121.3 191 41.9
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.0e-25 120.9 158 48.1
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 1.0e-25 120.9 166 45.8
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.4e-25 120.6 195 43.6
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 4.0e-25 119.0 160 46.2
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 4.0e-25 119.0 193 44.0
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.2e-25 118.6 189 43.9
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 5.2e-25 118.6 203 43.3
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 8.9e-25 117.9 159 45.3
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.5e-24 117.1 180 46.7
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.0e-24 116.7 144 47.2
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 2.6e-24 116.3 177 44.1
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.6e-24 116.3 164 48.8
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 5.8e-24 115.2 206 43.2
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.3e-23 114.0 157 44.6
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.3e-23 114.0 186 38.7
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-23 113.6 217 40.6
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.2e-23 113.2 170 46.5
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.7e-23 112.5 206 43.2
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 6.4e-23 111.7 151 43.0
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.4e-22 110.5 170 45.3
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 1.9e-22 110.2 164 40.2
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 3.2e-22 109.4 241 34.0
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.2e-22 109.4 225 36.0
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 3.2e-22 109.4 186 41.9
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 4.1e-22 109.0 162 45.7
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.1e-22 109.0 186 39.2
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.6e-21 107.1 216 40.3
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.7e-21 106.3 221 34.8
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 6.0e-21 105.1 167 44.9
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 3.0e-20 102.8 155 40.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 5.0e-20 102.1 167 41.9
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 6.6e-20 101.7 204 41.7
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 9.5e-19 97.8 144 43.8
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 3.6e-18 95.9 154 42.2
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.4e-17 94.0 98 56.1
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.4e-17 94.0 131 43.5
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 6.8e-17 91.7 149 47.0
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.2e-16 90.9 72 61.1
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.5e-16 90.5 148 39.9
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.2e-15 86.7 125 44.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.2e-15 86.7 125 44.8
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.9e-14 83.6 127 48.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.6e-13 80.5 108 55.6
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 4.6e-13 79.0 87 49.4
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.3e-12 77.4 162 36.4
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.3e-12 77.4 165 35.2
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 3.0e-12 76.3 137 37.2
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 2.8e-10 69.7 188 31.9
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 4.7e-10 68.9 151 38.4
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.8e-09 67.0 137 35.8
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 5.2e-09 65.5 143 33.6
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 8.9e-09 64.7 162 34.0
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-07 60.5 29 93.1
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 4.9e-07 58.9 133 30.1
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 6.4e-07 58.5 29 89.7
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 6.4e-07 58.5 29 89.7
CDE04G0766 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.1e-06 55.8 32 68.8
CDE06G1771 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 9.2e-06 54.7 32 65.6


User provided reference genes

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