Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 5.4e-181 637.5 311 100.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.6e-153 546.2 311 85.9
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 6.2e-153 544.3 311 85.2
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 2.6e-151 538.9 312 85.3
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 3.4e-151 538.5 311 86.8
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.6e-148 529.6 311 83.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.6e-148 529.6 311 83.3
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 6.0e-148 527.7 311 83.6
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.0e-148 527.7 310 81.6
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.5e-146 522.3 309 81.6
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.5e-146 522.3 310 83.2
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.3e-146 521.9 312 82.4
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.3e-146 521.5 311 82.0
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.6e-146 521.2 309 82.2
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 7.3e-146 520.8 310 79.4
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 4.7e-145 518.1 315 79.0
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.8e-144 516.2 310 81.9
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 4.0e-144 515.0 311 80.4
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 4.0e-144 515.0 310 81.9
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 5.3e-144 514.6 311 82.3
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.2e-143 513.5 312 80.4
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.0e-143 512.7 313 81.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 3.4e-143 511.9 311 81.0
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.8e-143 511.1 311 80.7
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 9.9e-143 510.4 311 80.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.9e-142 508.1 309 79.6
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.4e-141 505.8 309 80.6
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 3.2e-141 505.4 311 80.1
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.2e-140 503.4 314 79.3
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.6e-140 503.1 311 78.1
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.7e-140 502.3 311 79.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.5e-140 501.9 311 79.1
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.5e-140 501.9 311 77.8
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 4.6e-140 501.5 311 78.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 4.6e-140 501.5 310 80.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-139 500.0 311 79.1
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.7e-139 499.6 309 79.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.3e-139 499.2 310 77.7
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 5.1e-139 498.0 309 78.3
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 5.1e-139 498.0 330 75.5
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.1e-138 496.9 310 77.7
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.1e-138 496.9 310 77.4
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.5e-138 496.5 311 78.8
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.9e-138 496.1 311 77.8
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.5e-138 495.7 311 77.8
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 2.5e-138 495.7 309 79.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.5e-138 495.7 311 77.2
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.6e-138 494.6 311 76.2
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 7.3e-138 494.2 311 75.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 9.6e-138 493.8 313 79.2
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-137 493.4 311 78.8
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.1e-137 492.7 311 77.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.1e-137 492.7 315 76.5
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 2.8e-137 492.3 317 77.6
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.6e-137 491.9 308 77.9
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.6e-137 491.9 311 76.5
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.6e-137 491.9 311 77.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 3.6e-137 491.9 311 77.5
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 311 78.5
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 311 78.5
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 8.1e-137 490.7 309 78.0
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 8.1e-137 490.7 312 77.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.1e-136 490.3 321 75.7
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.4e-136 490.0 310 77.1
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.4e-136 490.0 311 77.2
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.8e-136 489.6 311 77.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.8e-136 489.6 309 77.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.1e-136 488.8 311 76.8
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-136 488.0 306 78.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 5.3e-136 488.0 309 77.3
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.3e-136 488.0 309 77.3
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.5e-135 486.5 313 77.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 76.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.5e-135 485.0 310 75.2
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 5.8e-135 484.6 320 75.3
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 7.6e-135 484.2 314 77.4
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.9e-134 482.3 318 74.5
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 4.9e-134 481.5 311 76.8
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 8.4e-134 480.7 318 74.8
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.9e-133 479.6 318 73.6
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.9e-133 479.6 311 75.2
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.2e-133 478.8 330 70.9
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.1e-133 477.6 311 74.9
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 9.3e-133 477.2 311 76.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.1e-132 476.1 309 75.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 6.0e-132 474.6 318 74.2
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 6.0e-132 474.6 309 76.1
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 7.9e-132 474.2 309 75.1
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.3e-131 473.4 281 82.2
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.7e-131 471.1 299 75.6
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 8.7e-131 470.7 313 76.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.9e-130 469.5 310 73.9
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 8.1e-129 464.2 315 72.1
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.8e-128 463.0 312 75.6
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 9.0e-128 460.7 320 71.2
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-127 460.3 320 71.2
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-127 459.9 281 79.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.0e-127 459.5 333 72.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 3.4e-127 458.8 320 70.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.3e-126 456.8 332 69.9
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.4e-126 454.5 317 71.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.1e-125 451.1 265 83.0
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.1e-122 443.7 320 68.8
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-122 443.4 268 81.7
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 6.9e-120 434.5 310 70.0
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 8.4e-118 427.6 262 78.2
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.5e-117 426.0 322 65.5
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.6e-116 421.8 322 67.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 3.3e-114 415.6 310 68.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-113 413.3 308 67.2
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.3e-113 411.4 306 68.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 2.5e-109 399.4 221 87.8
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.7e-108 396.0 311 66.2
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 8.8e-107 391.0 311 67.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 2.0e-103 379.8 229 77.7
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.6e-103 379.4 231 78.8
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.4e-101 373.6 332 58.4
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 7.2e-101 371.3 308 61.7
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.3e-99 366.3 307 62.2
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 5.1e-99 365.2 301 63.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 5.7e-98 361.7 335 55.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.7e-92 342.0 204 82.8
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 4.4e-90 335.5 222 75.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 4.2e-85 318.9 235 65.5
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 4.8e-81 305.4 321 53.6
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-80 304.3 165 90.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 5.9e-79 298.5 210 70.0
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.2e-74 284.3 156 88.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.6e-74 283.1 233 60.5
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.4e-74 282.7 311 50.2
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 9.5e-69 264.6 150 84.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 2.3e-67 260.0 171 77.8
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 4.0e-67 259.2 346 43.4
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.3e-65 251.9 171 71.3
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.8e-59 231.9 134 82.8
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.6e-58 229.9 164 67.7
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 6.2e-52 208.8 289 41.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.8e-51 205.3 112 86.6
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.8e-50 202.2 121 79.3
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 7.5e-50 201.8 131 76.3
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.9e-49 199.1 121 77.7
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-49 198.7 121 77.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-49 198.7 121 77.7
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-48 198.0 241 49.4
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-48 197.6 116 81.0
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-48 196.8 121 76.9
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-48 196.4 118 78.8
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.1e-48 195.3 118 78.8
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-47 193.0 118 77.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.0e-47 192.2 118 77.1
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-45 187.6 173 59.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-42 176.4 298 39.6
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.1e-40 168.7 93 87.1
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 9.2e-40 168.3 102 77.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.6e-39 167.5 102 77.5
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.2e-33 147.1 137 58.4
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 2.9e-33 146.7 95 72.6
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.1e-32 142.1 84 78.6
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.5e-26 124.4 117 55.6
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.5e-26 124.4 117 55.6
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-23 113.6 64 87.5
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-21 108.2 64 84.4
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.1e-20 102.1 107 54.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-19 101.3 74 73.0
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-18 97.8 93 55.9
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.5e-18 97.8 230 30.9
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.0e-18 97.4 50 90.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 2.0e-18 97.4 50 90.0
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-18 96.7 93 57.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.5e-18 96.3 93 55.9
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.8e-18 95.9 50 88.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.8e-18 95.9 50 88.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.3e-17 94.7 47 89.4
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 2.2e-17 94.0 77 58.4
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 3.8e-17 93.2 62 67.7
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.6e-13 79.3 80 51.2
QL05p086362 Quercus lobata HOM05D003958 ORTHO05D044828 1.5e-10 71.2 83 44.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 7.6e-10 68.9 124 38.7
QL05p086256 Quercus lobata HOM05D000045 ORTHO05D004773 1.0e-09 68.6 35 85.7
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 1.4e-08 64.7 153 30.7
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 7.1e-08 62.4 66 56.1


User provided reference genes

Program Settings