Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 3599.3 1851 100.0
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2947.5 1858 81.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2867.4 1859 78.6
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2835.1 1950 75.7
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2624.7 1862 72.2
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2551.2 1867 70.4
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2539.2 1870 69.9
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2504.6 1867 69.0
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2491.5 1864 68.6
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2479.9 1866 68.2
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2462.6 1863 67.4
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2446.0 1866 67.7
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2421.4 1868 66.6
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2414.4 1870 67.1
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 2399.8 1868 66.3
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 2367.0 1870 65.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2337.4 1864 64.9
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2328.5 1863 64.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2326.6 2010 61.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2321.2 2053 60.6
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2308.9 1864 64.2
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 2308.5 1863 63.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2296.5 1870 63.6
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2291.5 1870 63.6
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 2254.9 1867 62.1
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2253.4 1862 61.8
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 2250.3 1866 61.9
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 2232.6 1867 61.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 2222.2 1709 66.9
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2209.5 1884 61.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2207.9 1978 59.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2204.9 2000 59.0
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2204.5 1900 60.3
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 2204.1 1873 60.9
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 2177.9 1868 61.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2173.3 1872 60.8
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 2169.8 1720 64.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 2166.0 1872 60.5
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 2166.0 1866 60.6
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 2156.3 1877 59.9
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 2146.3 1872 60.5
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 2130.5 1878 59.7
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 2094.3 1866 58.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 2083.5 1866 58.6
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 2079.7 1869 57.6
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 2067.0 1884 57.5
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 2056.6 1886 57.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 2055.4 1739 61.0
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 2053.5 1864 59.5
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2016.9 1870 55.9
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 2000.7 1522 67.7
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1974.9 1866 55.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1973.7 1863 56.0
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1964.9 1869 55.7
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1960.7 1881 55.3
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1958.0 1870 55.2
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1955.6 1863 55.4
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1948.7 1866 55.3
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1948.3 1866 55.3
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1942.9 1512 65.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1869 54.9
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1869 54.9
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1932.1 1869 54.9
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1931.0 1863 55.0
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1927.9 1866 55.0
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1909.8 1862 56.1
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1908.3 1884 54.5
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1898.2 1445 66.8
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1888.2 1883 54.0
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1876.3 1873 54.1
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1806.2 1660 57.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1799.3 1897 52.1
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1798.5 1708 56.3
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1783.8 1975 49.8
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1723.8 1897 51.9
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1690.6 1938 48.8
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1674.4 1864 49.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1672.5 1869 49.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1554.3 1882 46.2
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1546.6 1366 58.3
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1506.9 1913 46.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1488.8 1365 57.1
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1463.4 2070 42.4
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1455.7 1385 56.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1436.4 1223 60.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1377.5 1296 57.1
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1376.7 1871 43.2
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1369.8 1190 61.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1315.1 1868 42.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 0.0e+00 1246.9 979 66.4
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.8e-292 1010.4 1038 52.2
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 3.4e-291 1006.1 829 62.8
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 4.6e-280 969.1 951 55.2
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 4.1e-276 956.1 644 73.6
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 9.4e-257 891.7 949 52.9
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 2.1e-256 890.6 738 63.7
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 5.9e-235 819.3 1949 31.0
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.0e-231 807.0 643 63.8
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.9e-221 773.9 854 49.8
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.3e-218 764.2 823 52.4
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.6e-217 759.6 612 63.9
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 7.8e-211 739.2 1137 40.8
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.3e-209 733.8 598 64.0
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-204 718.8 642 58.6
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.6e-192 678.3 706 52.8
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.5e-187 660.6 783 45.7
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.1e-179 634.8 1890 28.5
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.5e-179 634.0 535 61.3
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.3e-141 509.2 465 59.6
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.8e-138 498.8 436 58.3
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.4e-135 489.2 419 60.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.3e-135 487.3 434 58.5
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 5.3e-135 487.3 432 61.6
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.1e-132 479.6 642 44.1
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-128 466.1 380 63.7
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.8e-122 445.7 342 66.1
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.5e-121 442.6 346 64.2
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.2e-114 417.5 440 51.8
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.9e-112 411.0 351 62.4
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 2.9e-104 385.2 400 53.5
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 6.0e-102 377.5 337 57.0
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.4e-90 339.0 546 39.9
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.0e-82 311.6 442 39.1
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 9.0e-82 310.5 629 35.1
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.4e-79 302.4 261 62.5
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 9.3e-79 300.4 328 46.0
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.6e-78 299.7 269 56.5
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 6.9e-74 284.3 211 68.2
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 2.4e-71 275.8 274 53.6
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.3e-68 265.4 226 61.1
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-66 260.4 194 68.0
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.0e-61 243.8 200 64.0
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.8e-61 243.0 275 52.0
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-56 226.1 189 58.2
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.1e-54 219.5 825 25.2
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-51 209.9 161 65.8
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 8.2e-51 207.6 282 45.0
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-49 202.6 145 69.7
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 5.9e-49 201.4 178 59.6
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.0e-48 198.4 175 60.6
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 8.5e-48 197.6 201 53.2
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.4e-47 196.8 142 70.4
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 4.2e-47 195.3 184 54.3
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-43 183.3 132 67.4
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.7e-43 183.3 248 44.8
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-42 180.6 226 48.7
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.9e-40 172.6 132 66.7
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.5e-40 171.4 131 65.6
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.7e-38 166.0 919 23.2
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.7e-37 161.4 134 64.2
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.8e-37 161.0 147 59.9
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.3e-36 159.1 157 56.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 6.3e-35 154.8 123 58.5
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.4e-31 143.7 137 60.6
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.3e-28 132.5 175 42.9
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.2e-27 129.8 219 38.4
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.7e-27 129.0 104 58.7
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 7.0e-26 124.8 103 61.2
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.5e-24 118.2 109 55.0
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-22 113.2 136 50.7
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 3.0e-21 109.4 119 47.1
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 1.5e-20 107.1 93 54.8
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.8e-19 102.8 75 60.0
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.0e-17 96.7 120 45.8
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 3.5e-17 95.9 53 88.7
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 1.5e-15 90.5 80 55.0
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 7.2e-15 88.2 74 58.1
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 1.4e-13 84.0 76 59.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 3.0e-13 82.8 52 73.1
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.6e-12 79.7 87 54.0
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.7e-11 75.9 112 37.5
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-10 73.9 51 66.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-10 73.9 51 66.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 4.5e-09 68.9 91 44.0
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.0e-08 67.8 108 40.7
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 1.0e-08 67.8 106 41.5
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.9e-07 63.5 62 45.2
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.9e-07 63.5 61 47.5
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.1e-06 60.1 61 44.3


User provided reference genes

Program Settings