Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 5.3e-156 554.3 275 100.0
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.5e-118 429.9 229 86.9
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.2e-117 426.0 229 85.6
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.8e-117 425.6 229 85.2
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.5e-115 418.7 289 74.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.1e-113 413.7 273 74.0
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.2e-113 412.1 247 78.9
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.7e-112 409.1 282 71.6
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.6e-112 408.7 242 77.3
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.0e-111 407.1 250 76.8
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.4e-111 406.8 285 70.2
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.8e-111 406.4 284 72.2
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 8.8e-111 404.1 248 76.2
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.0e-110 402.9 281 71.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 2.0e-110 402.9 272 74.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 7.5e-110 401.0 270 71.9
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.5e-110 401.0 258 74.8
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.5e-110 401.0 258 74.8
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 3.7e-109 398.7 279 70.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.9e-109 398.3 249 75.9
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 4.9e-109 398.3 249 74.7
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.3e-109 397.9 295 69.2
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.1e-108 397.1 280 70.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.4e-108 396.7 283 70.7
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.4e-108 396.0 229 80.8
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 7.0e-108 394.4 265 74.0
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.2e-107 393.7 220 80.9
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 2.0e-107 392.9 260 72.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 4.5e-107 391.7 220 82.3
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.9e-107 391.3 284 67.6
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.0e-106 390.6 282 68.4
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.3e-106 390.2 283 68.2
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.3e-106 390.2 292 67.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.7e-106 389.8 229 80.3
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.3e-106 389.4 242 77.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.8e-106 388.7 279 67.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 5.0e-106 388.3 283 67.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 6.6e-106 387.9 227 77.1
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.1e-105 387.1 270 71.5
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.5e-105 386.0 237 75.5
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.6e-104 383.3 229 77.3
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.6e-104 382.1 279 67.0
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.6e-104 382.1 269 70.6
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-103 380.2 279 66.7
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.9e-103 377.5 279 66.3
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.2e-102 377.1 288 66.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.6e-102 375.9 270 68.5
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 5.7e-102 374.8 278 66.2
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.7e-102 374.8 226 75.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.8e-102 374.0 279 65.2
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 9.8e-102 374.0 281 65.1
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.3e-101 373.6 236 74.2
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 2.2e-101 372.9 288 66.3
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.3e-101 371.3 230 73.9
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 8.3e-101 370.9 273 68.9
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 8.3e-101 370.9 242 72.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.1e-100 370.5 250 69.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.1e-100 370.5 240 73.8
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.1e-100 370.5 220 77.7
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.1e-100 370.5 237 71.7
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 3.2e-100 369.0 286 65.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 5.4e-100 368.2 281 65.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 7.0e-100 367.9 228 75.4
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 7.0e-100 367.9 279 64.5
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.0e-99 366.3 284 65.8
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 2.7e-99 365.9 285 66.0
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 3.5e-99 365.5 228 73.2
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 3.5e-99 365.5 286 63.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 7.8e-99 364.4 286 64.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.3e-98 363.6 220 75.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.9e-98 362.5 221 74.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 3.9e-98 362.1 274 63.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 3.9e-98 362.1 228 73.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 5.0e-98 361.7 229 74.7
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.6e-98 361.3 283 67.5
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.5e-97 360.1 280 64.3
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 3.3e-97 359.0 274 63.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 4.3e-97 358.6 229 74.7
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.2e-96 357.1 275 64.4
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.2e-96 357.1 280 64.3
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 2.8e-96 355.9 283 64.7
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 4.7e-96 355.1 285 61.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.0e-95 354.0 227 71.4
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.4e-95 353.6 264 65.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.5e-94 350.1 234 68.4
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.7e-93 346.7 296 59.5
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.4e-92 343.6 269 63.9
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.4e-92 342.8 248 70.6
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 4.6e-91 338.6 232 68.1
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 2.0e-86 323.2 253 62.5
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.6e-86 322.8 182 84.1
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.7e-85 320.1 271 60.5
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.7e-85 320.1 257 62.6
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.9e-85 319.3 199 71.9
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-84 317.0 270 58.1
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.9e-84 316.6 271 60.1
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 4.1e-84 315.5 218 69.7
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.2e-83 313.9 232 65.5
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.6e-83 313.5 270 58.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 7.8e-83 311.2 251 62.2
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.3e-82 310.5 268 57.8
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.5e-81 306.2 220 65.9
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.3e-81 305.8 220 65.5
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 5.6e-81 305.1 183 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 7.3e-81 304.7 229 63.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.7e-80 302.0 228 61.4
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 2.0e-78 296.6 182 76.4
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.1e-76 290.8 252 56.3
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.9e-76 290.0 174 79.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.2e-75 287.3 179 74.3
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-75 287.3 237 63.7
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.3e-74 283.9 254 57.1
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.9e-68 263.5 163 75.5
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.6e-64 249.2 193 63.7
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.1e-57 227.6 231 51.1
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 6.4e-53 211.8 279 47.0
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 2.5e-49 199.9 264 41.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.4e-49 198.4 115 79.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.3e-48 197.6 308 38.6
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.2e-46 191.0 113 74.3
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.0e-46 190.3 136 64.0
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 2.5e-44 183.3 113 76.1
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.8e-42 177.2 283 39.2
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 9.6e-41 171.4 127 63.8
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.9e-33 147.1 116 60.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.7e-32 142.9 77 84.4
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 6.9e-31 138.7 84 78.6
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 9.0e-31 138.3 182 49.5
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 6.1e-27 125.6 76 72.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.1e-26 122.5 193 35.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 9.1e-23 111.7 81 63.0
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 3.6e-19 99.8 76 61.8
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.2e-14 84.7 56 66.1
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-14 84.7 95 48.4


User provided reference genes

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