Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 2.7e-115 419.1 284 100.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 2.8e-83 312.8 281 63.0
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 6.8e-82 308.1 288 65.6
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 8.9e-74 281.2 285 56.8
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 8.9e-74 281.2 277 58.5
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 9.9e-73 277.7 295 59.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.9e-72 276.2 285 60.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.7e-72 275.8 282 70.6
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 4.1e-71 272.3 277 59.6
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.3e-69 267.3 285 59.3
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.9e-69 265.8 281 58.7
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 5.1e-69 265.4 278 58.3
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 6.6e-69 265.0 277 58.5
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.1e-68 264.2 268 67.2
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.9e-68 263.5 279 54.1
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 4.3e-68 262.3 270 65.2
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.6e-68 261.2 268 66.8
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.1e-67 260.0 282 62.4
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.8e-67 259.6 279 55.9
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 3.6e-67 259.2 284 57.7
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 8.1e-67 258.1 285 58.9
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.1e-66 257.7 277 57.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.4e-66 257.3 269 58.7
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.4e-66 257.3 281 59.8
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.8e-66 256.9 279 53.0
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.1e-66 256.1 288 60.4
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 3.1e-66 256.1 267 60.7
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.8e-65 251.9 220 74.5
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 7.6e-65 251.5 312 57.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 9.9e-65 251.1 290 60.3
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.7e-64 250.4 268 64.6
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 2.2e-64 250.0 283 59.0
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 2.2e-64 250.0 278 53.2
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 6.4e-64 248.4 267 64.8
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.4e-64 248.1 278 52.9
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 8.4e-64 248.1 285 62.1
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.1e-63 247.7 283 54.4
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.4e-63 247.3 283 59.4
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.9e-63 246.9 283 64.3
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 4.2e-63 245.7 285 56.8
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 7.1e-63 245.0 281 60.1
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 9.3e-63 244.6 274 66.8
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 9.3e-63 244.6 307 58.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 6.0e-62 241.9 279 53.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.8e-62 241.5 291 54.6
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 1.0e-61 241.1 292 60.3
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.3e-61 240.7 288 62.2
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.7e-61 240.4 282 61.0
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 2.3e-61 240.0 279 55.9
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.9e-61 239.2 281 50.5
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.9e-61 239.2 272 56.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 6.6e-61 238.4 274 57.3
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 8.7e-61 238.0 274 51.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.5e-60 237.3 292 56.5
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.5e-60 236.5 296 50.3
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.3e-60 236.1 276 51.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 9.6e-60 234.6 275 53.1
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-59 233.8 298 55.4
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.6e-59 233.8 270 56.3
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.1e-59 233.4 238 54.2
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 2.1e-59 233.4 231 58.9
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.1e-59 233.4 274 58.8
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 3.6e-59 232.6 280 54.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 6.2e-59 231.9 302 57.6
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 6.9e-58 228.4 285 53.0
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 9.0e-58 228.0 269 57.2
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 4.4e-57 225.7 306 55.6
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.4e-57 225.7 278 50.7
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 9.9e-57 224.6 278 50.7
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.9e-56 222.2 218 61.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 8.4e-56 221.5 284 52.8
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.2e-54 217.6 237 63.7
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-54 216.9 224 61.6
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.1e-54 216.9 240 62.1
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 6.0e-54 215.3 235 60.0
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.3e-53 213.4 290 46.6
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.0e-53 213.0 269 60.2
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 3.9e-53 212.6 230 61.7
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.1e-53 212.2 286 53.8
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.9e-52 210.3 273 53.5
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.3e-52 209.5 244 59.0
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 4.3e-52 209.1 290 55.9
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.6e-52 208.8 274 55.1
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 5.6e-52 208.8 237 61.2
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-51 207.6 220 59.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-51 207.6 235 63.4
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.3e-51 207.6 220 59.1
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-51 207.2 242 63.2
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 1.6e-51 207.2 224 59.4
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-51 206.8 277 61.4
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.1e-50 204.5 270 44.8
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.4e-50 204.1 270 47.4
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.4e-50 204.1 222 57.7
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 5.3e-50 202.2 230 60.9
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 6.9e-50 201.8 246 61.0
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-49 201.1 281 54.8
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-49 201.1 280 55.4
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 3.4e-49 199.5 272 60.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.7e-48 197.2 275 54.2
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 2.9e-48 196.4 289 49.8
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.9e-48 196.4 234 57.7
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 4.2e-47 192.6 270 44.1
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 9.3e-47 191.4 270 44.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.0e-45 188.0 249 46.6
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-45 185.3 118 72.0
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 8.7e-45 184.9 113 77.9
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.9e-44 183.7 281 42.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.6e-44 182.2 274 42.3
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 5.6e-44 182.2 279 43.0
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 7.4e-44 181.8 268 43.3
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.4e-44 181.8 271 42.1
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.3e-43 181.0 278 40.3
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 6.2e-43 178.7 268 48.1
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 8.1e-43 178.3 128 65.6
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-42 176.8 262 42.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 6.9e-42 175.3 214 46.7
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.2e-41 174.5 277 41.5
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-41 172.9 274 45.6
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.3e-40 171.0 274 43.4
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-40 170.6 264 41.7
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.7e-40 170.6 270 43.7
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.9e-40 169.9 261 48.3
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.1e-39 167.9 271 40.6
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 9.3e-39 164.9 278 39.6
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.2e-38 164.5 109 70.6
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.3e-36 156.4 108 67.6
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 4.3e-36 156.0 279 37.3
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 4.5e-33 146.0 110 60.0
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.8e-32 142.9 285 43.2
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 5.0e-32 142.5 110 59.1
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-31 141.4 110 57.3
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-31 141.4 110 57.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.9e-31 140.6 285 41.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 3.2e-31 139.8 110 57.3
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 7.9e-30 135.2 286 35.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-29 132.5 102 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.7e-29 132.1 288 37.2
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 4.3e-28 129.4 93 62.4
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 5.7e-28 129.0 274 33.9
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.3e-27 127.9 78 76.9
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.6e-27 127.5 94 60.6
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 8.2e-27 125.2 253 35.6
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 3.1e-26 123.2 306 32.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 4.1e-26 122.9 284 41.5
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 5.3e-26 122.5 97 58.8
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.2e-25 121.3 98 55.1
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 7.7e-25 118.6 87 58.6
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 7.7e-25 118.6 110 50.0
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 5.5e-23 112.5 79 69.6
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 6.1e-22 109.0 87 56.3
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 2.9e-16 90.1 247 33.6
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.4e-13 81.3 106 43.4
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 5.2e-13 79.3 105 41.9
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.1e-10 69.7 39 79.5
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 7.0e-10 68.9 96 49.0
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.0e-08 65.1 62 53.2


User provided reference genes

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