Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 7.1e-156 553.9 284 100.0
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 2.5e-100 369.4 302 63.9
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 2.6e-97 359.4 302 63.2
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 5.0e-93 345.1 292 63.4
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 2.3e-77 293.1 313 53.4
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 4.3e-76 288.9 359 48.5
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 2.9e-72 276.2 292 52.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 5.4e-71 271.9 313 50.5
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.0e-69 267.7 294 51.0
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 2.3e-69 266.5 294 52.0
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.3e-69 266.5 301 50.5
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.2e-67 260.8 283 50.9
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.1e-66 257.7 292 48.6
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.4e-66 256.5 292 47.9
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 8.9e-66 254.6 289 52.2
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.5e-65 253.8 284 50.7
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 3.4e-65 252.7 364 44.2
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 9.9e-65 251.1 332 46.1
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.7e-64 250.4 284 51.1
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 2.9e-64 249.6 295 51.5
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 9.3e-63 244.6 276 48.6
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.6e-62 243.8 282 47.2
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.6e-62 243.8 264 49.6
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.5e-62 242.7 285 49.8
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.0e-62 241.9 328 43.6
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 6.0e-62 241.9 326 46.0
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 1.1e-60 237.7 300 47.3
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.5e-60 237.3 264 48.9
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 5.6e-60 235.3 333 42.9
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.3e-59 234.2 305 44.6
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 2.8e-59 233.0 384 41.4
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 8.1e-59 231.5 295 50.2
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 8.1e-59 231.5 295 50.2
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.8e-58 230.3 295 49.8
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 4.0e-58 229.2 271 50.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 2.0e-57 226.9 319 45.1
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.7e-56 223.8 325 42.8
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 6.4e-56 221.9 320 43.1
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.1e-55 221.1 325 42.5
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.9e-55 220.3 274 47.4
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 7.1e-55 218.4 325 43.1
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.6e-54 217.2 350 39.4
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.0e-53 214.5 331 42.6
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 3.3e-52 209.5 314 42.7
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.6e-51 207.2 219 52.1
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 2.1e-51 206.8 322 42.5
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 4.8e-51 205.7 286 43.4
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 8.1e-51 204.9 297 41.1
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.1e-50 204.5 354 40.1
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.8e-50 203.8 286 44.8
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.0e-49 200.3 275 46.9
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.7e-48 197.2 322 39.8
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 4.9e-48 195.7 290 42.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.9e-47 193.7 291 39.5
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 2.4e-47 193.4 280 41.1
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 4.2e-47 192.6 291 42.3
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 2.3e-45 186.8 273 42.9
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 3.7e-43 179.5 295 39.3
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 3.7e-43 179.5 342 38.9
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.1e-42 177.9 309 37.9
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 4.2e-39 166.0 214 47.2
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 2.7e-38 163.3 284 38.4
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.8e-37 160.6 277 39.7
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.9e-36 157.1 262 40.5
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 5.7e-36 155.6 297 39.4
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 7.4e-36 155.2 352 34.4
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 1.3e-35 154.5 367 32.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.4e-34 150.2 187 48.1
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.2e-30 137.9 115 64.3
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.6e-30 137.5 100 66.0
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.6e-30 136.0 168 44.0
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 6.1e-30 135.6 153 51.6
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 2.3e-29 133.7 207 42.0
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 3.3e-28 129.8 288 34.0
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.3e-28 129.8 272 35.3
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 1.3e-27 127.9 158 46.8
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.8e-26 124.0 271 33.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.8e-26 124.0 285 32.3
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 3.1e-26 123.2 283 32.5
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 4.1e-26 122.9 272 31.6
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.3e-26 122.5 280 32.9
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.5e-25 120.9 265 32.8
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.5e-25 120.9 282 31.6
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 2.0e-25 120.6 207 39.6
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 2.6e-25 120.2 163 47.2
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 3.4e-25 119.8 283 30.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 7.7e-25 118.6 266 31.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 7.7e-25 118.6 280 30.0
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 7.7e-25 118.6 266 31.2
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.0e-24 118.2 100 61.0
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.7e-24 117.5 280 30.0
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.5e-23 113.6 243 31.7
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.7e-22 110.2 265 33.2
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.0e-21 108.2 274 33.9
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.8e-21 107.5 271 32.1
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.8e-21 107.5 207 36.7
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.8e-21 107.5 274 34.3
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.8e-21 107.5 265 29.4
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.3e-21 107.1 274 33.6
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 3.0e-21 106.7 265 32.5
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 8.8e-21 105.1 144 40.3
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.6e-20 103.6 266 29.7
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 7.4e-20 102.1 208 33.7
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 9.7e-20 101.7 230 35.2
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 1.3e-19 101.3 274 31.4
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 2.8e-19 100.1 274 31.4
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 8.2e-19 98.6 140 42.9
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.4e-18 97.1 68 69.1
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.2e-17 94.7 115 45.2
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.9e-15 87.4 118 39.0
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 2.5e-15 87.0 151 39.7
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 5.5e-15 85.9 180 34.4
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 9.4e-15 85.1 380 25.0
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.4e-13 81.3 138 34.1
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 5.2e-13 79.3 108 48.1
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.6e-12 77.0 108 44.4
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.4e-12 76.3 108 43.5
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 7.4e-12 75.5 148 34.5
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 6.3e-11 72.4 99 44.4
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 1.8e-10 70.9 103 42.7
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 5.3e-10 69.3 102 35.3
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.5e-09 66.6 63 55.6
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 7.7e-09 65.5 63 55.6
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.3e-08 64.7 73 50.7
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 6.5e-08 62.4 136 30.1
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 1.9e-07 60.8 90 35.6
Medtr8g070660 Medicago truncatula HOM05D000336 ORTHO05D002705 4.2e-07 59.7 104 30.8
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 5.5e-07 59.3 127 26.8
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 2.1e-06 57.4 135 27.4
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.7e-06 57.0 135 32.6
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 3.6e-06 56.6 96 30.2
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 3.6e-06 56.6 103 28.2
Psat6g044640 Pisum sativum HOM05D000336 ORTHO05D002705 4.7e-06 56.2 102 31.4
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 4.7e-06 56.2 91 30.8
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 6.1e-06 55.8 127 26.8
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 6.1e-06 55.8 91 30.8
Eucgr.G02811 Eucalyptus grandis HOM05D000336 ORTHO05D002705 8.0e-06 55.5 127 27.6
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 8.0e-06 55.5 133 31.6


User provided reference genes

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