Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 2.0e-65 252.3 129 100.0
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 6.3e-43 177.6 129 75.2
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 6.3e-43 177.6 129 75.2
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 1.6e-38 162.9 131 69.5
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 3.6e-38 161.8 124 70.2
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 4.2e-31 138.3 136 60.3
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.3e-27 126.7 136 58.8
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 3.5e-25 118.6 137 54.0
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.1e-23 113.6 135 54.8
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.9e-23 112.8 134 50.7
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 4.3e-23 111.7 130 53.8
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 7.3e-23 110.9 142 48.6
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 2.1e-22 109.4 129 48.8
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 3.6e-22 108.6 135 50.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 6.1e-22 107.8 134 51.5
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 8.0e-22 107.5 122 52.5
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 1.0e-21 107.1 134 52.2
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 3.0e-21 105.5 130 48.5
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 5.2e-21 104.8 139 47.5
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 5.2e-21 104.8 130 48.5
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 1.2e-20 103.6 141 49.6
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 4.4e-20 101.7 134 47.8
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 2.9e-19 99.0 132 50.0
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 2.4e-18 95.9 136 47.1
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 2.4e-18 95.9 135 47.4
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 3.2e-18 95.5 132 48.5
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 3.2e-18 95.5 132 49.2
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 4.1e-18 95.1 130 49.2
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 1.6e-17 93.2 139 47.5
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 1.6e-17 93.2 140 46.4
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.0e-17 92.8 129 46.5
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.0e-17 92.8 129 46.5
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 2.7e-17 92.4 138 44.9
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 7.8e-17 90.9 136 44.9
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 3.0e-16 89.0 129 45.7
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 3.9e-16 88.6 133 45.9
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 3.9e-16 88.6 134 49.3
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 5.0e-16 88.2 145 44.8
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 1.9e-15 86.3 133 45.9
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 3.3e-15 85.5 139 41.7
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 1.2e-14 83.6 137 40.9
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 1.6e-14 83.2 138 42.0
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 2.1e-14 82.8 134 46.3
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 6.2e-14 81.3 131 47.3
MD14G1167200 Malus domestica HOM05D007617 ORTHO05D007195 8.0e-14 80.9 123 46.3
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 8.0e-14 80.9 134 46.3
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 1.4e-13 80.1 132 46.2
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 1.4e-13 80.1 134 44.0
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 1.4e-13 80.1 131 45.8
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 1.8e-13 79.7 136 41.9
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.8e-13 79.7 132 40.9
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.8e-13 79.7 106 46.2
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 2.3e-13 79.3 142 45.1
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 3.1e-13 79.0 132 40.9
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 3.1e-13 79.0 131 45.0
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 4.0e-13 78.6 140 45.0
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 5.2e-13 78.2 158 39.2
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 6.8e-13 77.8 132 41.7
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 8.9e-13 77.4 139 42.4
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 1.2e-12 77.0 130 44.6
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 1.5e-12 76.6 124 42.7
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.5e-12 76.6 141 42.6
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 2.0e-12 76.3 144 41.0
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 2.6e-12 75.9 138 39.9
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 4.4e-12 75.1 132 40.2
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 5.8e-12 74.7 155 42.6
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 5.8e-12 74.7 142 43.7
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 1.7e-11 73.2 142 39.4
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 2.2e-11 72.8 141 40.4
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 2.2e-11 72.8 133 44.4
Manes.15G153500 Manihot esculenta HOM05D007617 ORTHO05D007195 2.9e-11 72.4 145 41.4
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 3.7e-11 72.0 137 40.1
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 3.7e-11 72.0 128 40.6
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 8.3e-11 70.9 131 42.0
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 1.1e-10 70.5 134 42.5
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 1.4e-10 70.1 135 45.9
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 1.4e-10 70.1 135 40.0
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 3.2e-10 68.9 146 39.7
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 5.4e-10 68.2 114 46.5
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 5.4e-10 68.2 137 40.1
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 7.0e-10 67.8 134 41.8
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 9.2e-10 67.4 132 39.4
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 4.6e-09 65.1 137 41.6
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 6.0e-09 64.7 134 41.8
Ah.03g133500 Amaranthus hybridus HOM05D007617 ORTHO05D007195 7.8e-09 64.3 112 37.5
THA.LOC109117150 Tarenaya hassleriana HOM05D007617 ORTHO05D007195 1.0e-08 63.9 132 34.8
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 1.7e-08 63.2 68 54.4
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.3e-08 62.8 136 40.4
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.0e-08 62.4 142 40.1
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.9e-08 62.0 142 40.1
Lj7P603T33 Lonicera japonica HOM05D007617 ORTHO05D007195 3.9e-08 62.0 129 35.7
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 1.1e-07 60.5 135 42.2
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 1.9e-07 59.7 142 39.4
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 2.5e-07 59.3 134 36.6
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 2.5e-07 59.3 78 52.6
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 4.3e-07 58.5 141 39.0
Migut.K01418 Erythranthe guttata HOM05D007617 ORTHO05D007195 5.6e-07 58.2 139 38.8
A06p19360 Brassica napus HOM05D010525 ORTHO05D007195 7.3e-07 57.8 129 38.0
BcaC07g39315 Brassica carinata HOM05D010525 ORTHO05D007195 9.5e-07 57.4 129 34.1
C08p23300 Brassica napus HOM05D010525 ORTHO05D007195 9.5e-07 57.4 129 34.1
BolC8t49961H Brassica oleracea HOM05D010525 ORTHO05D007195 9.5e-07 57.4 129 34.1
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 2.1e-06 56.2 70 52.9
CARHR276990 Cardamine hirsuta HOM05D010525 ORTHO05D007195 2.8e-06 55.8 92 44.6
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 2.8e-06 55.8 143 36.4
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 4.7e-06 55.1 134 34.3
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 6.2e-06 54.7 70 51.4


User provided reference genes

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