Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 3.1e-44 181.4 91 100.0
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.6e-21 105.9 71 78.9
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 3.7e-21 104.8 71 77.5
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 3.1e-20 101.7 73 71.2
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 9.0e-20 100.1 71 71.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.2e-19 99.8 67 77.6
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 3.4e-19 98.2 74 68.9
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.9e-19 97.4 67 76.1
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 5.9e-19 97.4 67 76.1
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.0e-18 96.7 66 77.3
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.3e-18 96.3 69 72.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.3e-18 96.3 67 71.6
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.3e-18 96.3 72 68.1
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 3.8e-18 94.7 66 72.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 3.8e-18 94.7 71 69.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.8e-18 94.7 71 69.0
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.8e-18 94.7 71 69.0
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 5.0e-18 94.4 71 69.0
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 8.5e-18 93.6 66 74.2
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.4e-17 92.8 69 69.6
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.4e-17 92.8 66 74.2
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.4e-17 92.8 77 66.2
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.4e-17 92.8 72 66.7
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.4e-17 92.8 67 71.6
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 1.9e-17 92.4 67 71.6
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.9e-17 92.4 71 70.4
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.9e-17 92.4 66 71.2
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 5.5e-17 90.9 67 70.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 9.3e-17 90.1 71 67.6
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 9.3e-17 90.1 67 70.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 9.3e-17 90.1 69 68.1
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.2e-16 89.7 71 66.2
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.2e-16 89.7 66 71.2
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.2e-16 89.7 67 70.1
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.6e-16 89.4 66 68.2
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.6e-16 89.4 69 66.7
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.6e-16 89.4 74 63.5
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.6e-16 89.4 71 66.2
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.7e-16 88.6 67 71.6
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 3.6e-16 88.2 71 63.4
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.6e-16 88.2 67 68.7
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.6e-16 88.2 67 68.7
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.6e-16 88.2 72 65.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 3.6e-16 88.2 71 67.6
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 6.1e-16 87.4 71 66.2
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 6.1e-16 87.4 66 71.2
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.0e-15 86.7 69 65.2
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.0e-15 86.7 69 65.2
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.0e-15 86.7 69 65.2
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 1.4e-15 86.3 66 69.7
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 1.4e-15 86.3 66 69.7
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.3e-15 85.5 71 64.8
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 2.3e-15 85.5 66 65.2
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 2.3e-15 85.5 69 65.2
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.9e-15 84.7 66 66.7
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.9e-15 84.7 66 65.2
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 6.7e-15 84.0 66 65.2
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 6.7e-15 84.0 66 68.2
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 8.8e-15 83.6 66 66.7
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 8.8e-15 83.6 72 56.9
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 1.1e-14 83.2 66 66.7
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.1e-14 83.2 71 64.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.1e-14 83.2 66 63.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.1e-14 83.2 71 64.8
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.1e-14 83.2 67 65.7
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.5e-14 82.8 67 65.7
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 1.5e-14 82.8 67 62.7
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.5e-14 82.8 66 65.2
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 1.5e-14 82.8 66 63.6
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.5e-14 82.8 66 63.6
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.9e-14 82.4 66 65.2
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.5e-14 82.0 71 63.4
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.5e-14 82.0 66 63.6
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 3.3e-14 81.6 66 63.6
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 4.3e-14 81.3 66 62.1
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 4.3e-14 81.3 66 66.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 7.4e-14 80.5 67 65.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 7.4e-14 80.5 66 63.6
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 9.7e-14 80.1 66 66.7
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 9.7e-14 80.1 66 66.7
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.7e-13 79.3 66 60.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 2.2e-13 79.0 66 60.6
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.2e-13 79.0 66 60.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.2e-13 79.0 66 60.6
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.2e-13 79.0 66 60.6
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.2e-13 79.0 66 60.6
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 4.8e-13 77.8 66 59.1
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.4e-12 76.3 71 54.9
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 5.3e-12 74.3 68 55.9
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 9.1e-12 73.6 111 43.2
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.0e-11 72.4 66 56.1
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.3e-10 69.7 121 39.7
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 8.5e-10 67.0 53 66.0
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.1e-08 62.4 43 67.4
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 7.9e-08 60.5 43 67.4
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.0e-07 60.1 69 47.8
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.4e-07 59.7 37 73.0
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.8e-07 59.3 66 45.5
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 2.3e-07 58.9 66 48.5
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 5.1e-07 57.8 68 47.1
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 2.0e-06 55.8 58 53.4


User provided reference genes

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