Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 8.3e-114 413.7 205 100.0
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 8.3e-114 413.7 205 100.0
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.8e-68 263.1 205 66.8
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 3.0e-63 245.7 206 62.6
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.2e-57 225.3 205 60.0
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 7.2e-57 224.6 219 54.8
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 7.2e-57 224.6 211 58.3
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.2e-56 223.8 223 58.3
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.7e-56 222.6 207 57.5
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.0e-55 220.7 205 58.5
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 3.0e-55 219.2 217 59.4
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.1e-55 218.4 207 58.0
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-54 216.9 219 54.3
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.3e-54 215.3 213 55.9
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.4e-54 214.5 213 55.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.7e-53 212.2 215 54.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 6.3e-53 211.5 208 56.7
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.4e-52 210.3 213 54.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.1e-52 209.1 211 55.9
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.1e-52 209.1 209 54.1
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.1e-52 209.1 209 56.5
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 4.1e-52 208.8 206 56.3
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.6e-51 206.1 221 56.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 4.5e-51 205.3 211 55.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 3.8e-50 202.2 212 53.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 5.0e-50 201.8 208 54.8
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.1e-49 200.7 206 56.3
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.1e-49 200.7 219 52.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 4.2e-49 198.7 217 52.5
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 9.4e-49 197.6 205 53.7
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 6.1e-48 194.9 212 51.4
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.3e-47 193.0 205 54.6
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 3.9e-47 192.2 211 53.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 5.1e-47 191.8 208 52.9
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 3.3e-46 189.1 204 54.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.3e-46 189.1 219 51.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.4e-46 188.7 223 51.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.4e-44 183.7 205 50.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.4e-44 183.0 213 48.8
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.9e-44 181.4 204 50.5
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.9e-44 181.4 207 53.1
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.6e-43 179.5 221 50.7
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 4.5e-43 178.7 281 40.2
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 5.9e-43 178.3 212 53.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.0e-42 177.6 224 48.7
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.0e-42 177.6 203 49.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.3e-42 177.2 207 51.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 5.0e-42 175.3 211 51.2
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 3.2e-41 172.6 224 47.8
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.6e-40 170.2 223 46.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.1e-40 169.9 129 64.3
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.7e-40 169.5 249 45.0
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.7e-40 169.5 249 45.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 7.9e-40 167.9 208 51.9
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.8e-39 166.8 224 46.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.0e-39 166.0 226 45.1
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 5.2e-39 165.2 224 45.5
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 8.8e-39 164.5 196 48.0
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 9.7e-38 161.0 218 46.3
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.3e-37 160.6 206 46.6
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.3e-37 160.6 131 62.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.3e-37 160.6 209 47.4
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 2.8e-37 159.5 203 47.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.7e-37 159.1 182 50.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 6.3e-37 158.3 130 62.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 8.2e-37 157.9 144 62.5
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.1e-36 157.5 125 63.2
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 3.1e-36 156.0 203 47.8
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 4.1e-36 155.6 245 41.6
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.2e-35 154.1 134 59.7
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.0e-35 153.3 122 60.7
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-35 153.3 205 45.4
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 2.6e-35 152.9 205 46.3
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 4.5e-35 152.1 206 46.1
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 7.7e-35 151.4 226 42.5
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 8.5e-34 147.9 205 43.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.1e-33 147.5 205 43.9
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.5e-33 147.1 125 60.0
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-33 147.1 117 63.2
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.5e-33 147.1 105 67.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 3.2e-33 146.0 205 45.4
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.2e-33 145.6 194 45.9
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.1e-32 143.3 205 42.9
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.7e-32 142.9 210 42.4
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 3.6e-32 142.5 143 53.8
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.0e-32 141.4 212 44.3
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 8.0e-32 141.4 210 42.4
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.0e-31 141.0 205 42.9
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.4e-31 140.6 172 50.0
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.3e-31 139.8 202 43.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.3e-31 139.8 122 59.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.7e-31 138.3 210 43.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 6.7e-31 138.3 132 53.0
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.0e-30 136.7 131 56.5
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.4e-30 135.6 131 56.5
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 7.5e-30 134.8 92 69.6
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.7e-29 133.7 214 43.5
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 2.2e-29 133.3 87 70.1
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.8e-29 132.1 211 40.3
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 6.3e-29 131.7 144 53.5
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.4e-28 130.6 215 43.3
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-28 130.2 208 41.8
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.1e-28 129.4 210 41.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 3.1e-28 129.4 177 47.5
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.1e-28 129.0 218 41.7
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.1e-28 129.0 130 54.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.1e-28 129.0 125 58.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.1e-28 129.0 204 39.2
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 5.3e-28 128.6 238 37.4
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.0e-28 128.3 125 57.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-27 127.5 130 54.6
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-27 127.5 130 54.6
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-27 127.1 211 42.2
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-27 127.1 125 57.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 2.0e-27 126.7 125 53.6
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.0e-27 126.7 130 54.6
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-26 124.0 148 45.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-26 124.0 130 50.0
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-26 123.2 125 56.0
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.6e-24 117.1 84 65.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.6e-24 117.1 84 65.5
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.6e-24 117.1 84 65.5
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 4.0e-23 112.5 84 64.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 4.0e-23 112.5 84 64.3
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 4.0e-23 112.5 84 64.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 5.2e-23 112.1 145 49.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 8.8e-23 111.3 131 49.6
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.5e-22 108.2 215 40.5
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.7e-21 107.1 136 50.7
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.7e-21 107.1 130 50.0
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-21 106.7 137 50.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.7e-21 105.9 134 50.0
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.7e-21 105.9 134 50.0
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.3e-21 105.1 144 46.5
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 8.3e-21 104.8 126 50.0
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.1e-20 104.4 123 52.0
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.4e-20 103.2 134 46.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.4e-20 103.2 134 46.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-20 102.8 135 48.9
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 3.1e-20 102.8 135 48.9
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.6e-19 100.5 87 58.6
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.0e-19 100.1 134 49.3
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-18 97.1 135 45.2
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.7e-18 97.1 135 45.2
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-18 96.3 134 47.8
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-17 93.2 89 56.2
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.5e-17 93.2 89 56.2
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.5e-17 93.2 136 45.6
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 3.2e-17 92.8 244 36.1
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 7.2e-17 91.7 201 34.3
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 9.5e-17 91.3 90 46.7
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-16 90.9 134 46.3
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-15 87.0 196 37.8
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.0e-14 83.6 209 37.3
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.0e-14 83.6 84 48.8
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 5.7e-14 82.0 122 46.7
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.3e-13 80.9 123 43.9
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.2e-13 80.1 216 34.3
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-13 79.7 111 45.9
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.8e-13 79.7 208 33.2
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 4.9e-13 79.0 209 34.9
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 4.9e-13 79.0 72 58.3
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.2e-11 74.3 53 69.8
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 2.0e-11 73.6 218 33.5
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.7e-11 73.2 122 43.4
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.0e-10 71.2 129 44.2
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.3e-10 70.9 125 41.6
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 8.6e-10 68.2 208 32.7
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 2.5e-09 66.6 216 30.1
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 3.3e-09 66.2 218 31.2
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 4.3e-09 65.9 124 40.3
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.2e-08 64.3 217 32.7
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.2e-08 64.3 131 35.9
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 3.6e-08 62.8 50 64.0
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.7e-08 62.4 130 36.2
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 1.8e-07 60.5 214 31.8
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 1.8e-07 60.5 214 31.8
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 4.0e-07 59.3 132 37.1
Pp3c16_16540 Physcomitrium patens HOM05D018410 ORTHO05D021325 1.2e-06 57.8 59 49.2
AagrBONN_evm.TU.Sc2ySwM_228.3156 Anthoceros agrestis HOM05D018410 ORTHO05D021325 3.4e-06 56.2 60 45.0
Aqoxy5G03598 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.4e-06 55.8 76 44.7
BcaB06g27546 Brassica carinata HOM05D002760 ORTHO05D003169 5.7e-06 55.5 28 85.7
Mapoly0030s0024 Marchantia polymorpha HOM05D034947 ORTHO05D036670 7.5e-06 55.1 88 42.0
Mapoly0030s0028 Marchantia polymorpha HOM05D034947 ORTHO05D036670 7.5e-06 55.1 88 42.0


User provided reference genes

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