Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 4.2e-131 471.5 255 100.0
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.5e-104 383.3 255 80.4
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.8e-102 376.3 273 72.9
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.9e-99 366.3 256 74.6
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.6e-96 355.9 256 73.4
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.7e-95 353.2 257 70.8
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.8e-94 349.7 255 71.0
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.4e-94 349.4 257 69.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.4e-94 349.4 257 72.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.1e-94 348.6 257 72.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.9e-92 342.4 258 71.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.7e-90 335.9 256 69.9
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.7e-90 335.9 259 72.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.7e-90 335.9 257 72.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.6e-90 335.5 258 67.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.6e-90 335.5 258 67.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 4.7e-90 335.1 256 73.0
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 8.0e-90 334.3 256 71.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-89 333.2 255 70.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.0e-89 332.4 257 73.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 4.0e-89 332.0 255 72.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.0e-89 332.0 255 65.1
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 8.8e-89 330.9 246 69.5
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.4e-88 328.9 257 72.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 7.5e-88 327.8 288 61.5
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.7e-87 326.6 260 67.7
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 6.3e-87 324.7 255 70.2
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.3e-87 324.7 255 68.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-86 323.9 257 71.2
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.3e-86 321.6 256 69.9
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.1e-86 320.9 255 67.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.0e-85 319.7 256 65.2
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.0e-85 319.7 255 64.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 3.5e-85 318.9 259 65.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 4.5e-85 318.5 256 67.6
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.5e-85 318.5 255 67.1
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 7.7e-85 317.8 248 67.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.7e-84 316.6 246 67.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.8e-84 315.5 248 66.9
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.9e-83 313.2 248 65.3
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 4.2e-83 312.0 229 71.6
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.2e-83 312.0 227 69.2
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.2e-83 312.0 234 68.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.2e-83 312.0 255 65.1
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 9.4e-83 310.8 251 65.3
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-82 310.1 234 67.1
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.1e-82 309.7 255 67.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.4e-81 307.0 246 65.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.4e-81 307.0 234 67.5
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.3e-81 306.2 257 62.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.3e-81 306.2 245 63.3
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.0e-81 305.8 249 64.7
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.0e-81 305.8 251 64.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 3.0e-81 305.8 246 65.4
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 4.0e-81 305.4 257 62.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 4.0e-81 305.4 257 63.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 8.8e-81 304.3 248 62.5
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.2e-80 303.9 246 65.9
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.4e-80 302.4 256 63.3
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 4.4e-80 302.0 256 61.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.7e-80 301.6 238 65.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.7e-79 300.1 226 68.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.7e-79 298.9 228 67.1
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.1e-78 297.4 258 60.1
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.4e-78 296.2 235 66.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 3.1e-78 295.8 258 61.6
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.4e-78 295.0 252 64.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.2e-77 293.9 258 60.5
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.6e-77 293.5 246 64.6
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.6e-77 293.5 258 60.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.0e-77 293.1 244 64.8
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 2.0e-77 293.1 244 61.9
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.0e-77 293.1 261 60.9
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.5e-77 292.4 248 60.5
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 7.7e-77 291.2 258 63.2
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.7e-76 290.0 257 63.4
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.9e-76 289.3 257 65.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.8e-76 288.9 257 65.4
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 6.6e-76 288.1 208 76.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.9e-75 286.6 256 60.2
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 5.5e-75 285.0 233 63.1
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 9.5e-75 284.3 285 55.4
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.6e-74 283.5 256 61.3
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.6e-74 282.3 274 54.4
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.6e-74 282.3 258 63.6
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 6.1e-74 281.6 231 64.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.3e-73 279.6 256 59.8
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.0e-73 279.3 257 59.9
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 4.0e-73 278.9 236 63.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.0e-73 278.9 248 62.9
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.5e-72 274.6 233 66.5
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.7e-71 273.5 237 61.6
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.2e-71 273.1 258 58.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.9e-71 271.9 232 59.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 8.3e-71 271.2 275 53.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.1e-70 270.8 248 58.9
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.2e-70 269.2 275 52.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 9.2e-70 267.7 256 60.5
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.6e-69 266.9 245 57.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.0e-69 266.5 258 59.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.0e-69 266.5 245 56.7
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.7e-69 266.2 263 56.3
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.7e-69 266.2 263 56.3
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 4.5e-69 265.4 164 79.9
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 7.8e-69 264.6 236 61.0
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.0e-68 264.2 246 58.5
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-68 263.1 252 57.1
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.3e-68 263.1 258 57.0
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.9e-68 262.7 271 55.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.9e-68 262.7 266 57.1
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 8.6e-68 261.2 243 58.0
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.1e-67 260.8 191 71.2
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 3.3e-67 259.2 261 54.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 3.3e-67 259.2 261 54.8
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.2e-66 257.3 196 68.4
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.2e-66 257.3 226 57.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 4.9e-63 245.4 208 65.9
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.7e-61 239.6 239 54.0
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.0e-60 236.1 233 56.2
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.0e-60 236.1 168 68.5
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.6e-58 229.2 230 60.4
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 3.7e-55 219.2 193 61.1
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.5e-53 212.6 237 50.6
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.5e-51 207.2 229 49.3
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 2.5e-51 206.5 261 44.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.8e-50 203.0 184 60.3
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 4.0e-49 199.1 170 65.9
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.2e-49 198.7 179 59.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.6e-48 196.4 252 49.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.5e-43 180.6 123 69.1
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 5.6e-43 178.7 245 43.3
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.4e-41 174.1 124 66.1
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.2e-38 162.9 202 52.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 4.6e-37 159.1 113 74.3
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-35 154.5 215 45.1
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.5e-32 144.1 238 35.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.4e-30 137.5 231 36.4
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.5e-29 132.9 80 75.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-28 131.0 120 58.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.6e-28 128.6 120 58.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.1e-27 127.9 119 58.0
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.1e-27 127.9 150 48.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.2e-24 117.9 187 43.3
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.4e-22 110.9 119 47.9
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-20 103.6 122 48.4
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-20 103.6 122 48.4
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-20 103.6 122 48.4
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.1e-18 97.1 156 45.5
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 3.4e-16 89.7 104 45.2
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 4.6e-13 79.3 105 43.8
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.8e-12 77.4 249 28.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.8e-12 77.4 77 58.4
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.9e-12 76.3 200 30.5
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 1.9e-11 73.9 47 74.5
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.6e-10 70.9 59 61.0
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 8.4e-07 58.5 35 74.3
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 1.1e-06 58.2 73 46.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.4e-06 57.8 142 28.9
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.9e-06 57.4 183 29.5
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 3.2e-06 56.6 174 28.7
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 7.2e-06 55.5 97 35.1
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 9.3e-06 55.1 195 28.2


User provided reference genes

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