Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 2201.4 1163 100.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2058.5 1170 90.9
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2058.5 1169 91.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2055.0 1168 91.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2037.7 1169 90.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2031.1 1170 89.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2026.9 1171 89.4
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1999.6 1165 88.8
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1992.2 1161 87.4
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1988.4 1174 88.6
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1987.2 1170 88.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1171 87.6
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1986.5 1165 87.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1983.4 1164 86.1
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1980.3 1164 87.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1979.9 1164 87.6
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1165 87.6
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1976.4 1159 87.7
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1974.1 1160 87.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1969.5 1164 86.5
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1969.1 1164 86.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1164 85.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1964.1 1168 87.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1962.6 1166 86.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1164 86.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1159 86.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1170 86.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1174 87.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1170 87.0
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1170 86.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1163 86.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1957.6 1160 86.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1957.6 1198 85.1
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1956.8 1164 86.3
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1956.4 1167 86.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1955.3 1168 87.0
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1951.4 1170 86.7
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1949.1 1161 86.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1164 85.6
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1164 85.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1947.6 1164 85.2
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1947.2 1164 86.2
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1944.5 1159 86.4
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1943.7 1163 86.3
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1941.0 1171 85.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1938.3 1174 85.7
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1936.8 1211 82.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1935.6 1196 84.7
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1935.6 1162 85.6
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1173 85.5
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1161 85.4
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1928.7 1166 85.1
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1927.9 1168 84.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1925.2 1162 85.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1924.1 1164 84.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1164 84.9
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1177 84.3
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1918.7 1165 86.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1091 88.5
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1912.5 1167 84.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1154 86.4
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1163 84.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1160 84.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1178 83.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1203 82.4
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1167 83.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1894.8 1181 82.8
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1163 84.4
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1165 84.1
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1882.5 1170 83.6
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1173 83.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1880.1 1169 83.4
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1879.0 1167 83.5
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1877.8 1177 83.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1877.8 1169 83.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1172 83.4
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1876.7 1172 83.4
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1873.2 1167 83.4
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1871.7 1177 82.8
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1871.7 1165 83.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1869.7 1171 82.7
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1866.7 1166 80.6
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1861.3 1188 81.7
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1857.0 1099 84.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1852.4 1165 82.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1100 84.5
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1830.5 1192 81.8
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1830.1 1173 81.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1830.1 1326 75.0
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1784.2 1165 77.2
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1780.0 1175 78.0
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1768.4 1164 77.0
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1720.7 1155 77.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1713.7 1160 76.2
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1681.4 1160 74.0
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1652.1 1159 72.3
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1648.3 994 84.3
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1634.8 1160 72.2
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1606.3 940 87.4
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1595.1 1162 75.2
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1473.0 837 89.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1455.7 1164 63.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1446.4 1160 64.7
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1394.0 1160 62.4
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1389.8 838 84.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1384.4 1161 62.0
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1361.3 1177 60.7
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1343.2 799 85.9
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1282.7 797 82.1
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1234.9 782 79.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1129.4 695 83.3
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1117.4 921 61.6
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 2.4e-306 1055.8 1190 47.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.8e-299 1032.3 653 81.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.5e-284 982.6 576 88.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.5e-284 982.6 743 71.2
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.7e-283 979.9 590 84.7
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.1e-274 949.1 599 82.8
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.2e-272 943.0 545 88.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 4.0e-261 905.6 627 74.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.3e-256 890.6 520 83.5
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 3.4e-220 769.6 480 84.2
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.9e-219 766.5 465 81.1
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 4.0e-213 746.1 442 88.9
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 7.4e-159 565.8 351 85.8
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.5e-143 515.0 357 76.5
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.3e-112 411.4 274 75.9
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.6e-111 407.9 377 57.0
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.8e-88 332.0 195 85.1
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 5.1e-59 234.2 168 76.8
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.9e-46 191.8 143 73.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 8.8e-43 180.3 116 82.8
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 3.9e-35 154.8 78 93.6
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 8.8e-35 153.7 102 81.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 4.4e-34 151.4 108 76.9
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 4.1e-32 144.8 96 78.1
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.6e-31 142.9 87 79.3
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.5e-18 99.8 95 55.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.0e-18 99.4 80 62.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 9.1e-16 90.5 102 70.6
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.9e-14 85.5 84 61.9
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.8e-12 79.0 51 76.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.4e-11 76.6 51 74.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.0e-11 75.1 51 70.6
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.9e-09 68.2 334 27.2


User provided reference genes

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