Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.7e-233 811.6 409 100.0
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.1e-180 636.0 475 72.4
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.6e-180 634.8 455 74.3
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 2.0e-175 619.4 484 69.2
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 7.6e-175 617.5 500 67.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.2e-174 615.9 455 71.0
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.9e-173 612.8 481 69.0
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 7.8e-172 607.4 455 70.8
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.0e-171 607.1 459 71.0
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 1.3e-171 606.7 461 69.8
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.3e-171 605.9 454 70.7
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.3e-171 605.9 455 70.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 8.7e-171 604.0 446 71.3
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.9e-170 602.8 465 71.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.3e-170 601.7 455 69.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 4.3e-170 601.7 461 69.2
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 7.3e-170 600.9 455 70.3
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 7.3e-170 600.9 455 69.5
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.1e-169 599.4 455 70.3
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.8e-169 599.0 455 69.7
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 4.7e-169 598.2 481 66.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 4.7e-169 598.2 471 67.3
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 4.7e-169 598.2 455 69.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 8.1e-169 597.4 455 69.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 4.0e-168 595.1 455 68.8
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.2e-167 593.6 466 68.5
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.0e-167 592.8 455 69.0
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.0e-167 592.8 455 69.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.6e-167 592.4 455 68.8
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.4e-167 592.0 455 68.6
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.3e-166 590.1 455 69.0
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.3e-166 590.1 455 68.6
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.7e-166 589.7 455 68.8
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.2e-166 589.3 454 68.5
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 2.2e-166 589.3 466 67.6
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.2e-166 589.3 455 68.6
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.9e-166 589.0 455 67.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 3.8e-166 588.6 455 68.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 8.4e-166 587.4 454 67.6
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.1e-165 587.0 455 69.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.9e-165 586.3 454 67.8
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.9e-165 586.3 455 68.8
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.2e-165 585.5 453 67.8
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 3.2e-165 585.5 480 65.6
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.2e-165 585.1 446 69.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 5.4e-165 584.7 455 67.9
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 7.1e-165 584.3 455 68.8
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 9.3e-165 583.9 455 68.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 9.3e-165 583.9 452 67.0
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.1e-164 582.8 453 67.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 3.5e-164 582.0 455 66.8
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.5e-164 582.0 453 68.2
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 6.0e-164 581.3 455 66.8
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.0e-163 580.5 454 66.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.0e-163 578.9 453 67.3
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 5.1e-163 578.2 503 63.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.1e-162 577.0 455 67.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.5e-162 576.6 453 67.3
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.5e-162 576.6 454 67.6
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.9e-162 576.2 454 67.0
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.8e-161 572.4 464 66.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 8.1e-161 570.9 455 66.4
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.4e-160 570.1 445 67.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 3.1e-160 568.9 454 65.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.3e-158 563.5 495 63.0
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.1e-157 560.5 457 65.0
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.4e-157 559.3 457 64.8
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 4.2e-157 558.5 482 64.7
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 5.4e-157 558.1 463 64.1
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.2e-156 557.0 455 65.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.2e-156 557.0 463 63.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.1e-156 556.2 455 65.1
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.1e-153 546.2 454 63.7
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 6.2e-153 544.7 442 65.4
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 6.2e-153 544.7 571 55.0
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 6.9e-152 541.2 453 64.5
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.0e-151 539.7 429 67.1
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 2.5e-149 532.7 426 66.9
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.2e-149 531.9 513 59.3
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.7e-148 529.3 436 65.4
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.9e-148 527.7 493 59.4
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 5.1e-147 525.0 431 65.2
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 7.6e-143 511.1 501 56.5
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.1e-141 507.3 466 61.6
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 4.6e-140 501.9 341 77.7
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 4.6e-140 501.9 445 61.6
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 6.9e-136 488.0 457 56.0
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.2e-135 487.3 341 75.4
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.9e-135 485.0 445 60.4
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 2.2e-134 483.0 442 60.4
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.9e-134 482.6 455 55.8
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.8e-134 482.3 416 60.1
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.0e-131 474.2 334 74.6
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.5e-130 470.3 455 58.2
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.2e-129 466.5 399 63.7
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.4e-128 463.0 391 62.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 9.1e-128 461.1 415 61.9
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.4e-127 459.1 493 54.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.5e-125 453.0 372 66.7
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 3.6e-124 449.1 390 61.8
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.0e-123 447.6 383 62.4
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 3.0e-123 446.0 458 51.3
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.8e-121 438.7 333 68.5
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 3.1e-120 436.0 470 53.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 9.1e-120 434.5 446 52.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.0e-115 419.5 397 57.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 3.9e-115 419.1 375 60.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 5.5e-109 398.7 306 70.6
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.2e-108 397.5 476 47.3
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 4.0e-99 365.9 254 72.8
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.2e-98 364.4 460 46.1
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 6.3e-97 358.6 462 45.0
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 8.9e-91 338.2 275 66.2
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-85 321.2 444 45.5
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.1e-80 302.8 414 47.1
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.5e-77 293.5 441 37.2
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.2e-74 284.6 229 66.8
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 7.5e-74 282.0 189 76.2
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.3e-62 243.8 167 73.7
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.1e-35 153.7 136 58.8
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 6.5e-33 146.0 113 71.7
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.5e-32 144.1 430 28.1
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.5e-32 144.1 136 56.6
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.7e-31 140.6 123 61.8
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.3e-30 138.3 103 68.0
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 2.5e-29 134.0 149 52.3
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.3e-28 131.7 104 62.5
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.8e-28 130.6 107 60.7
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 3.7e-28 130.2 103 64.1
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.9e-24 117.9 151 49.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.6e-23 114.8 96 58.3
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 3.5e-23 113.6 125 51.2
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 4.6e-23 113.2 65 89.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.5e-21 108.2 64 81.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 7.4e-21 105.9 89 58.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 7.4e-21 105.9 89 58.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 6.3e-20 102.8 56 91.1
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.1e-19 100.5 141 44.0
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 3.1e-19 100.5 67 76.1
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.2e-18 98.6 305 28.2
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 7.7e-18 95.9 66 65.2
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.8e-17 93.6 59 76.3
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.1e-16 92.0 324 27.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 5.5e-16 89.7 106 52.8
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.4e-16 89.0 102 50.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 4.3e-13 80.1 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 9.1e-11 72.4 61 60.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 2.0e-10 71.2 46 76.1
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 7.2e-08 62.8 63 52.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 3.6e-07 60.5 51 60.8
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.7e-07 60.1 51 58.8
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 7.9e-07 59.3 72 45.8
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 5.1e-06 56.6 103 35.9


User provided reference genes

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