Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071969 Quercus lobata HOM05D012473 ORTHO05D010844 0.0e+00 1216.8 703 100.0
QL10p005044 Quercus lobata HOM05D012473 ORTHO05D010844 6.4e-214 748.0 801 62.8
CiPaw.03G115200 Carya illinoinensis HOM05D012218 ORTHO05D010844 8.4e-65 252.7 1028 31.6
Haze_16528 Corylus avellana HOM05D012473 ORTHO05D010844 3.6e-47 194.1 727 36.3
Cfa001988 Carpinus fangiana HOM05D012473 ORTHO05D010844 4.6e-47 193.7 732 36.1
Thecc.01G142200 Theobroma cacao HOM05D012218 ORTHO05D010844 6.5e-33 146.7 820 29.0
Potri.007G098300 Populus trichocarpa HOM05D012218 ORTHO05D017165 1.1e-32 146.0 784 31.6
FAN28G1165 Fragaria x ananassa HOM05D012473 ORTHO05D010844 1.5e-29 135.6 756 32.1
Gohir.A05G382500 Gossypium hirsutum HOM05D012218 ORTHO05D010844 1.5e-29 135.6 773 26.4
Sabra07G0081700 Salix brachista HOM05D012218 ORTHO05D017165 1.7e-28 132.1 781 32.4
FvH4_1g25520 Fragaria vesca HOM05D012473 ORTHO05D010844 1.1e-27 129.4 760 30.0
FAN19G1264 Fragaria x ananassa HOM05D012473 ORTHO05D010844 1.4e-27 129.0 759 29.5
Gorai.012G037100 Gossypium raimondii HOM05D012218 ORTHO05D010844 2.0e-26 125.2 772 26.6
Lj2g0023112 Lotus japonicus HOM05D012459 ORTHO05D010844 1.0e-25 122.9 861 28.6
Gohir.D04G032700 Gossypium hirsutum HOM05D012218 ORTHO05D010844 2.1e-23 115.2 770 26.0
MD15G1138700 Malus domestica HOM05D012473 ORTHO05D010844 3.6e-23 114.4 864 27.9
FAN23G1528 Fragaria x ananassa HOM05D012473 ORTHO05D010844 8.0e-23 113.2 797 27.9
Glyma.16G211200 Glycine max HOM05D012459 ORTHO05D010844 8.0e-23 113.2 850 27.4
Actinidia06596 Actinidia chinensis HOM05D010873 ORTHO05D013124 4.0e-22 110.9 985 27.8
Phvul.004G137400 Phaseolus vulgaris HOM05D012459 ORTHO05D010844 5.2e-22 110.5 826 25.8
Ca_25366_v3 Cicer arietinum L. HOM05D012459 ORTHO05D010844 6.7e-22 110.2 813 27.2
TAR381G1694 Trochodendron aralioides HOM05D012218 ORTHO05D010844 5.7e-21 107.1 1018 24.4
Dinv07458 Davidia involucrata HOM05D010873 ORTHO05D013124 7.0e-19 100.1 706 28.9
Rhsim10G0129700 Rhododendron simsii HOM05D017996 ORTHO05D017165 4.5e-18 97.4 711 26.2
FAN26G1572 Fragaria x ananassa HOM05D012473 ORTHO05D010844 7.7e-18 96.7 751 31.0
Duzib187G0544 Durio zibethinus HOM05D012218 ORTHO05D010844 1.7e-17 95.5 706 25.9
Cpa.g.sc37.40 Carica papaya HOM05D001512 ORTHO05D001574 3.8e-17 94.4 515 28.7
TWI31G0860 Tripterygium wilfordii HOM05D012218 ORTHO05D010844 5.0e-17 94.0 756 28.7
PGR102G2674 Punica granatum HOM05D012473 ORTHO05D010844 1.1e-16 92.8 745 25.1
TPR.G28364 Trifolium pratense HOM05D012459 ORTHO05D010844 5.5e-16 90.5 802 25.1
vmacro12771 Vaccinium macrocarpon HOM05D017996 ORTHO05D017165 1.0e-14 86.3 170 40.6
Glyma.16G211400 Glycine max HOM05D000005 ORTHO05D010844 2.6e-13 81.6 762 26.5
Glyma.09G162200 Glycine max HOM05D012459 ORTHO05D010844 4.4e-13 80.9 697 24.8
Medtr6g078430 Medicago truncatula HOM05D012459 ORTHO05D010844 5.7e-13 80.5 806 23.7
Nn3g21159 Nelumbo nucifera HOM05D012218 ORTHO05D019306 3.1e-11 74.7 919 26.3
arahy.Tifrunner.gnm1.ann1.UJV3YP Arachis hypogaea HOM05D012459 ORTHO05D010844 4.1e-11 74.3 741 22.9
Lalb_Chr19g0134401 Lupinus albus HOM05D012459 ORTHO05D010844 4.1e-11 74.3 162 42.0
CSS0038628 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 5.4e-11 73.9 159 38.4
Oeu028233.1 Olea europaea HOM05D010873 ORTHO05D013124 5.4e-11 73.9 802 28.7
CSS0006956 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.2e-10 72.8 166 36.7
CSS0018747 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.2e-10 72.8 166 36.7
CSS0030355 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.6e-10 72.4 159 38.4
Psat0s4832g0040 Pisum sativum HOM05D012459 ORTHO05D010844 2.0e-10 72.0 432 27.8
Aa31LG1G18120 Aethionema arabicum HOM05D009813 ORTHO05D011936 7.7e-10 70.1 141 43.3
Solyc05g008490.2 Solanum lycopersicum HOM05D010873 ORTHO05D013124 1.3e-09 69.3 159 30.2
Sopen05g004330 Solanum pennellii HOM05D010873 ORTHO05D013124 2.9e-09 68.2 261 26.8
THA.LOC104800245 Tarenaya hassleriana HOM05D009813 ORTHO05D011936 3.8e-09 67.8 728 25.3
VMungo0464G0894 Vigna mungo HOM05D000005 ORTHO05D012186 5.0e-09 67.4 805 23.5
Sc09g0002200 Simmondsia chinensis HOM05D030946 ORTHO05D010844 6.5e-09 67.0 172 39.5
arahy.Tifrunner.gnm1.ann1.9KKX2T Arachis hypogaea HOM05D012459 ORTHO05D010844 8.6e-09 66.6 163 34.4
Sed0024256 Sechium edule HOM05D036858 ORTHO05D010844 8.6e-09 66.6 372 29.8
Atru.chr6.1276 Acer truncatum HOM05D017996 ORTHO05D017165 1.5e-08 65.9 197 35.0
ClCG01G004750 Citrullus lanatus HOM05D036858 ORTHO05D010844 7.2e-08 63.5 156 39.1
PGSC0003DMG400030562 Solanum tuberosum HOM05D010873 ORTHO05D013124 7.2e-08 63.5 261 27.2
ECA233G2412 Erigeron canadensis HOM05D037976 ORTHO05D035162 9.5e-08 63.2 168 32.1
Manes.05G184500 Manihot esculenta HOM05D012218 ORTHO05D010844 1.2e-07 62.8 820 24.6
EL10Ac4g09661 Beta vulgaris HOM05D030946 ORTHO05D010844 2.1e-07 62.0 156 40.4
Lalb_Chr17g0336721 Lupinus albus HOM05D012459 ORTHO05D010844 4.7e-07 60.8 158 36.1
AUR62003591 Chenopodium quinoa HOM05D030946 ORTHO05D010844 6.1e-07 60.5 99 40.4
FvH4_5g34270 Fragaria vesca HOM05D012473 ORTHO05D010844 6.1e-07 60.5 265 29.8
SalBow6G5290 Salvia bowleyana HOM05D010873 ORTHO05D013124 8.0e-07 60.1 303 25.1
FAN08G2906 Fragaria x ananassa HOM05D012473 ORTHO05D010844 1.0e-06 59.7 169 35.5
AUR62000557 Chenopodium quinoa HOM05D030946 ORTHO05D010844 1.8e-06 58.9 94 42.6
CARHR098770 Cardamine hirsuta HOM05D009813 ORTHO05D011936 5.2e-06 57.4 148 37.8
AL8G40940 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 8.8e-06 56.6 144 35.4
CDE04G2884 Ceratophyllum demersum HOM05D041736 ORTHO05D034253 8.8e-06 56.6 141 35.5


User provided reference genes

Program Settings