Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 5.3e-303 1043.5 511 100.0
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 7.8e-254 880.2 524 84.0
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 2.4e-247 858.6 521 81.4
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 2.1e-243 845.5 522 80.5
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.5e-241 839.3 524 79.6
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 4.6e-238 827.8 512 80.7
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 7.9e-238 827.0 516 78.1
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 7.4e-236 820.5 515 78.4
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.6e-235 819.3 511 79.8
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.5e-233 812.8 513 78.4
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 4.5e-233 811.2 520 78.1
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 3.2e-231 805.1 503 77.5
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 9.3e-231 803.5 498 77.7
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.6e-230 802.7 526 76.6
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 2.1e-230 802.4 515 75.9
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.3e-229 798.9 505 77.2
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 8.7e-229 797.0 518 76.8
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 7.4e-228 793.9 522 75.7
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.3e-227 793.1 515 74.4
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.1e-227 792.3 499 78.0
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.4e-226 788.9 510 74.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 5.3e-226 787.7 524 75.0
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 6.9e-226 787.3 517 78.3
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.8e-225 784.3 518 76.3
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.3e-224 783.1 519 76.9
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 1.7e-224 782.7 519 76.7
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 6.5e-224 780.8 531 72.1
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.5e-224 780.8 437 82.8
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.1e-223 780.0 469 78.9
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.9e-223 779.2 512 74.2
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.5e-223 777.7 518 75.3
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.7e-222 775.4 508 74.0
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.8e-221 772.7 512 73.8
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.5e-220 769.6 523 75.3
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.9e-220 769.2 465 79.1
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 3.3e-220 768.5 500 75.2
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 4.3e-220 768.1 523 72.8
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 7.4e-220 767.3 516 74.2
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 7.4e-220 767.3 508 74.6
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.7e-219 765.0 519 72.4
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.8e-219 764.6 524 72.9
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.4e-218 762.3 522 72.4
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 2.0e-217 759.2 487 74.9
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.5e-217 758.1 529 72.2
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.3e-216 756.5 464 76.5
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.2e-216 755.7 464 76.5
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.2e-216 755.7 493 75.5
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 2.1e-214 749.2 535 70.5
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 3.0e-213 745.3 522 70.9
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 5.1e-213 744.6 509 71.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 3.4e-209 731.9 513 71.2
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 4.5e-209 731.5 519 69.7
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 7.7e-209 730.7 480 72.1
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.0e-208 730.3 456 75.9
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.0e-208 730.3 509 70.1
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.3e-208 729.9 494 71.9
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.7e-208 729.6 498 71.5
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 8.5e-208 727.2 462 74.0
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.1e-207 726.9 497 71.8
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.1e-207 726.9 474 73.0
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.5e-207 725.7 514 69.5
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.2e-207 725.3 502 70.9
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 3.2e-207 725.3 498 71.3
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.2e-207 724.9 494 71.5
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 7.2e-207 724.2 523 68.3
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 3.6e-206 721.8 497 71.0
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 6.1e-206 721.1 503 71.0
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.9e-206 720.7 518 70.1
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.8e-205 719.5 492 70.3
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.8e-205 719.5 495 70.9
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.3e-203 713.4 502 70.7
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.3e-203 713.4 522 68.4
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 3.7e-203 711.8 517 69.2
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 5.3e-202 708.0 497 70.2
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 5.3e-202 708.0 510 69.2
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 7.0e-194 681.0 493 68.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 7.7e-193 677.6 451 72.7
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 1.7e-192 676.4 486 67.5
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 2.2e-192 676.0 408 79.9
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 8.5e-192 674.1 413 78.2
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 7.5e-188 661.0 452 70.4
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.2e-187 659.4 502 66.7
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 4.5e-185 651.7 511 65.0
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 2.1e-182 642.9 452 67.5
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 4.7e-182 641.7 479 64.3
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 6.8e-181 637.9 519 67.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.2e-180 637.1 518 64.7
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.7e-177 625.9 501 63.7
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.0e-157 558.9 369 76.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.9e-151 540.0 314 81.2
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 4.0e-149 532.3 322 81.7
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.2e-148 530.8 461 54.9
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 4.4e-148 528.9 338 75.4
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 5.8e-148 528.5 482 53.7
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.2e-140 504.2 340 72.9
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.5e-140 503.8 444 53.4
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 8.4e-131 471.5 385 61.6
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.9e-119 433.7 272 78.7
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 4.8e-118 429.1 399 50.9
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 6.2e-118 428.7 308 65.3
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 3.5e-113 412.9 299 70.9
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 6.2e-110 402.1 362 52.5
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 1.6e-105 387.5 251 73.3
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.1e-97 360.5 283 67.5
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.0e-96 358.2 387 51.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 3.7e-94 349.7 526 41.4
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 6.3e-86 322.4 228 70.2
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 1.0e-80 305.1 225 68.4
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.0e-64 251.9 503 33.6
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 6.3e-62 242.7 126 81.7
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 4.6e-44 183.3 133 66.9
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 5.4e-37 159.8 433 30.5
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.3e-30 138.7 101 69.3
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 9.2e-29 132.5 88 73.9
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 3.6e-25 120.6 108 60.2
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.4e-24 118.6 378 25.4
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 8.9e-24 115.9 373 27.9
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 2.9e-22 110.9 73 68.5
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.8e-22 110.5 90 65.6
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 2.3e-19 101.3 82 59.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.3e-18 97.4 65 69.2
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.6e-15 87.8 181 29.8
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.4e-13 81.3 78 57.7
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.6e-12 78.6 89 49.4
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-10 72.4 38 76.3
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 6.2e-09 66.6 79 50.6
MSTRG.22612 Avicennia marina HOM05D005216 ORTHO05D006453 1.3e-06 58.9 294 23.5
RcHm_v2.0_Chr3g0482901 Rosa chinensis HOM05D005888 ORTHO05D007791 1.7e-06 58.5 47 63.8
BcaB06g26221 Brassica carinata HOM05D005216 ORTHO05D006453 2.9e-06 57.8 288 24.3


User provided reference genes

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