Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.7e-97 359.4 188 100.0
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 2.6e-77 292.4 189 83.1
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 3.5e-74 282.0 183 80.3
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 2.1e-71 272.7 180 76.7
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.4e-70 270.0 181 79.0
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 2.3e-70 269.2 173 78.0
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 5.2e-70 268.1 188 73.9
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 4.4e-69 265.0 177 76.3
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.2e-68 262.7 178 75.3
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 2.2e-68 262.7 183 73.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 4.8e-68 261.5 175 76.6
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 8.3e-68 260.8 180 74.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.1e-67 260.4 180 74.4
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 1.8e-67 259.6 176 77.3
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 3.1e-67 258.8 176 76.1
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 5.4e-67 258.1 180 76.1
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.2e-66 256.9 179 73.2
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.6e-66 256.5 176 73.9
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.0e-66 256.1 177 72.9
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 2.7e-66 255.8 183 72.1
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 4.5e-66 255.0 175 77.1
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 5.9e-66 254.6 176 74.4
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 5.9e-66 254.6 178 71.9
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 2.3e-65 252.7 176 72.7
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.3e-65 252.7 182 70.3
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 3.8e-65 251.9 182 70.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 8.6e-65 250.8 179 70.9
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.9e-64 249.6 173 74.6
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.9e-64 249.6 180 69.4
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 4.2e-64 248.4 181 69.6
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 9.5e-64 247.3 176 71.6
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.5e-64 247.3 188 69.7
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 9.5e-64 247.3 177 70.6
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.1e-63 246.1 170 73.5
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 2.8e-63 245.7 179 70.9
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.6e-63 245.4 186 71.0
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.4e-62 243.4 174 71.3
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.3e-62 242.7 175 70.3
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 2.3e-62 242.7 177 69.5
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 3.0e-62 242.3 185 68.6
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 4.0e-62 241.9 174 72.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 6.8e-62 241.1 173 72.3
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 6.8e-62 241.1 185 67.0
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 6.8e-62 241.1 180 68.3
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 8.8e-62 240.7 183 69.9
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.5e-61 240.0 176 68.8
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.0e-61 239.6 176 70.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.4e-61 238.8 200 66.5
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 2.8e-60 235.7 181 65.2
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.7e-60 235.3 181 65.2
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 4.9e-60 235.0 173 69.4
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 4.9e-60 235.0 261 55.6
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 6.3e-60 234.6 173 68.8
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 1.8e-59 233.0 182 65.4
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 1.8e-59 233.0 182 65.4
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.4e-59 232.6 164 78.0
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 5.4e-59 231.5 166 72.9
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 5.4e-59 231.5 176 69.3
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 7.0e-59 231.1 182 64.8
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 7.0e-59 231.1 182 64.8
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 7.0e-59 231.1 152 82.2
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 9.2e-59 230.7 178 65.7
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 1.6e-58 229.9 170 67.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 1.6e-58 229.9 176 67.0
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 3.5e-58 228.8 173 65.3
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 3.5e-58 228.8 178 68.0
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 7.8e-58 227.6 177 66.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.0e-57 227.3 180 65.0
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.7e-57 226.5 170 70.6
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 3.8e-57 225.3 178 63.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 5.0e-57 224.9 181 63.5
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 3.3e-56 222.2 181 63.5
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 4.3e-56 221.9 156 74.4
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 4.3e-56 221.9 181 61.9
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 9.5e-56 220.7 177 63.3
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 4.7e-55 218.4 181 63.0
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.4e-54 216.9 165 69.7
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 2.3e-54 216.1 168 67.9
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.2e-53 213.8 178 62.9
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.6e-53 212.6 172 63.4
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 4.4e-53 211.8 170 64.7
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.4e-53 211.8 150 73.3
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 7.5e-53 211.1 166 66.3
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 2.9e-52 209.1 166 65.1
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.1e-51 205.3 136 77.9
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 4.1e-51 205.3 146 71.9
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.9e-49 198.7 209 54.1
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 8.6e-49 197.6 180 57.8
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 5.6e-48 194.9 171 57.9
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.6e-47 193.4 178 57.9
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.6e-47 193.4 139 68.3
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.1e-46 190.7 154 66.2
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.4e-46 190.3 148 70.3
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 9.8e-45 184.1 195 51.8
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 1.7e-44 183.3 130 75.4
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 6.0e-42 174.9 180 50.0
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 5.0e-41 171.8 170 51.8
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.5e-40 170.2 120 72.5
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 2.8e-39 166.0 118 70.3
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 4.7e-39 165.2 170 49.4
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 8.3e-36 154.5 140 61.4
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 2.7e-34 149.4 140 56.4
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 6.8e-30 134.8 117 60.7
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 4.9e-28 128.6 160 39.4
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.5e-24 116.3 93 61.3
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.4e-19 99.8 67 76.1
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.0e-17 94.4 69 72.5
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 7.1e-11 71.6 54 72.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.3e-09 66.6 148 29.1
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 3.0e-09 66.2 42 76.2
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 2.5e-08 63.2 75 50.7


User provided reference genes

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